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ICEDIG SIGNED

Innovation and consolidation for large scale digitisation of natural heritage

Total Cost €

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EC-Contrib. €

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Partnership

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 ICEDIG project word cloud

Explore the words cloud of the ICEDIG project. It provides you a very rough idea of what is the project "ICEDIG" about.

harmonised    building    workflows    policy    science    citizen    prioritisation    industry    unification    natural    holding    80    geo    digital    construction    dissco    objects    acceptable    tackled    principles    collections    greatest    sciences    consultation    stream    service    digitise    accessing    climate    icedig    10    seamlessly    paving    enhancements    incentive    organisational       complexity    sheer    55    infrastructure    consolidation    outputs    digitising    scientific    modern    larger    shared    underused    planning    insights    innovations    digitally    bio    technological    schemes    capacity    data    governance    diversity    successful    biodiversity    time    socio    globally    prototypes    blueprints    billion    esfri    cultural    collection    model    community    expertise    foreseeable    size    world    involvement    industrial    distributed    petabyte    rendering    financial    continent    innovation    catalogued    critical    models    impacts    manner    imaged    unify   

Project "ICEDIG" data sheet

The following table provides information about the project.

Coordinator
HELSINGIN YLIOPISTO 

Organization address
address: YLIOPISTONKATU 3
city: HELSINGIN YLIOPISTO
postcode: 14
website: www.helsinki.fi

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Finland [FI]
 Project website https://www.icedig.eu/
 Total cost 2˙999˙755 €
 EC max contribution 2˙999˙755 € (100%)
 Programme 1. H2020-EU.1.4.1.1. (Developing new world-class research infrastructures)
 Code Call H2020-INFRADEV-2017-1
 Funding Scheme RIA
 Starting year 2018
 Duration (year-month-day) from 2018-01-01   to  2020-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    HELSINGIN YLIOPISTO FI (HELSINGIN YLIOPISTO) coordinator 531˙756.00
2    CARDIFF UNIVERSITY UK (CARDIFF) participant 472˙045.00
3    PICTURAE BV NL (HEERHUGOWAARD) participant 366˙098.00
4    NATURAL HISTORY MUSEUM UK (LONDON) participant 324˙430.00
5    STICHTING NATURALIS BIODIVERSITY CENTER NL (LEIDEN) participant 312˙381.00
6    CONSORTIUM OF EUROPEAN TAXONOMIC FACILITIES BE (BRUXELLES) participant 223˙075.00
7    AGENTSCHAP PLANTENTUIN MEISE BE (MEISE) participant 190˙650.00
8    PLAZI GMBH CH (BERN) participant 169˙813.00
9    MUSEUM NATIONAL D'HISTOIRE NATURELLE FR (PARIS) participant 133˙875.00
10    CENTRE INFORMATIQUE NATIONAL DE L'ENSEIGNEMENT SUPERIEUR FR (MONTPELLIER) participant 126˙250.00
11    TARTU ULIKOOL EE (TARTU) participant 75˙125.00
12    ROYAL BOTANIC GARDENS KEW UK (RICHMOND) participant 74˙255.00

Map

 Project objective

Modern science requires digital access to data. European collections account for 55% of the natural sciences collections globally, holding more than 1 billion objects, which represent 80% of the world’s bio- and geo-diversity. Only around 10% of these have been digitally catalogued and 1-2% imaged, rendering their information underused. The sheer scale and complexity of digitising and providing access to this information requires technological, socio-cultural, and organisational capacity enhancements across the continent. This challenge is being tackled by the new ESFRI initiative Distributed System of Scientific Collections (DiSSCo). DiSSCo will unify access to collection data in a harmonised and integrated manner across Europe. It will enable critical new insights from integrated digital data to address some of the world's greatest challenges, such as biodiversity loss and impacts of climate change. However, new research and technological innovation will be required to solve the challenges of efficiently digitising and seamlessly accessing the collections. Building on previous project outputs, community and industrial expertise, the ICEDIG project will design all the technical, financial, policy and governance aspects for developing and operating DiSSCo. A consolidation stream will develop a shared governance model to support all aspects of service unification such as implementation of the open access principles, incentive schemes, planning and prioritisation, capacity development, etc. A technology stream will focus on the innovations that will be required to digitise a significant part of major collections in a foreseeable time, at acceptable cost, and to manage petabyte-size data. The work will be carried out in wide consultation with the larger community. The outputs will be prototypes, blueprints, novel workflows, new industry partnerships, and citizen involvement models, paving the way for the successful construction of the DiSSCo research infrastructure.

 Deliverables

List of deliverables.
Natural history collections and digital skills of citizens Documents, reports 2020-02-25 08:49:31
Prioritizing scientific and societal needs for data of small and private collections Documents, reports 2020-02-25 08:49:31
State of the art and perspectives on mass imaging of skins and other vertebrate material Documents, reports 2020-02-25 08:49:32
Data quality in transcription Documents, reports 2020-02-25 08:49:31
Digitisation infrastructure design for EUDAT Documents, reports 2020-02-25 08:49:31
Design of a collection digitization dashboard Demonstrators, pilots, prototypes 2020-02-25 08:49:31
Updating data standards in transcription Documents, reports 2020-02-25 08:49:31
Improving the detection of collection-based citizen science projects Documents, reports 2020-02-25 08:49:31
State of the art and perspectives on mass imaging of liquid samples Documents, reports 2020-02-25 08:49:32
Inventory of criteria for prioritization of digitization of collections focussed on scientific and societal needs Documents, reports 2020-02-25 08:49:29
State of the art and perspectives on mass imaging of microscopic and other slides Documents, reports 2020-02-25 08:49:31
Methods for automated text digitization Documents, reports 2020-02-25 08:49:31
Interoperability with institutional collection management systems Documents, reports 2020-02-25 08:49:31
Communication and dissemination plan Documents, reports 2020-02-25 08:49:29
Data management plan of the ICEDIG project Open Research Data Pilot 2020-02-25 08:49:29

Take a look to the deliverables list in detail:  detailed list of ICEDIG deliverables.

 Publications

year authors and title journal last update
List of publications.
2019 Zhengzhe Wu, Jere Kahanpää, Pasi Sihvonen, Anne Koivunen, Hannu Saarenmaa
Automated Methods in Digitisation of Pinned Insects
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.38260
Biodiversity Information Science and Standards 3 2020-02-25
2019 Mathias Dillen, Quentin Groom, Donat Agosti, Lars Nielsen
Zenodo, an Archive and Publishing Repository: A tale of two herbarium specimen pilot projects
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37080
Biodiversity Information Science and Standards 3 2020-02-25
2019 E Louise Allan, Laurence Livermore, Benjamin Price, Olha Shchedrina, Vincent Smith
A Novel Automated Mass Digitisation Workflow for Natural History Microscope Slides
published pages: , ISSN: 1314-2828, DOI: 10.3897/bdj.7.e32342
Biodiversity Data Journal 7 2020-02-25
2018 Le Bras, Gwenaël; Chagnoux, Simon
Evaluation of Existing Volunteer Transcription Systems
published pages: , ISSN: , DOI: 10.5281/zenodo.2578938
1 2020-02-25
2019 Egmond, E. van, L. Willemse, D. Paul, M. Woodburn, A. Casino, K. Gödderz, X. Vermeersch, J. Bloothoofd, A. Wijers and N. Raes
Design of a Collection Digitisation Dashboard
published pages: , ISSN: , DOI: 10.5281/zenodo.2621055
2020-02-25
2018 Price, B. W., Dupont, S., Allan, E. L., Blagoderov, V., Butcher, A. J., Durrant, J., Holtzhausen, P., Kokkini, P., Livermore, L. & Smith, V.
ALICE: Angled Label Image Capture and Extraction for high throughput insect specimen digitisation
published pages: , ISSN: , DOI: 10.31219/osf.io/s2p73
2020-02-25
2018 Henry Engledow, Sofie De Smedt, Ann Bogaerts, Quentin Groom
An Evaluation of In-house versus Out-sourced Data Capture at the Meise Botanic Garden (BR)
published pages: e26514, ISSN: 2535-0897, DOI: 10.3897/biss.2.26514
Biodiversity Information Science and Standards 2 2020-02-25
2018 Allan, E. L., Price, B. W., Shchedrina, O., Dupont, S., Livermore, L., & Smith, V.
A Low Cost Approach to Specimen Level Imaging of Natural History Microscope Slides using a DSLR System
published pages: , ISSN: , DOI: 10.31219/osf.io/dvmsh
2020-02-25
2019 Mathias Dillen, Quentin Groom, Sarah Phillips, Irena Spasic
Next Steps in Data Capture from Specimen Labels and Data Integration: Lessons learnt from the ICEDIG pilots
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37081
Biodiversity Information Science and Standards 3 2020-02-25
2019 Cazenave Nicolas; Béchard Lorène; Rouchon Olivier
Digitisation infrastructure design for EUDAT / CINES
published pages: , ISSN: , DOI: 10.5281/zenodo.3364533
2 2020-02-25
2019 Gwenaël Le Bras; Simon Chagnoux
Interactions between the communities of Les Herbonautes and Die Herbonauten: Observation notes
published pages: , ISSN: , DOI: 10.5281/zenodo.2599714
1 2020-02-25
2019 Phillips Sarah; Dillen Mathias; Groom Quentin; Green Laura; Weech Marie- Hélène; Wijkamp Noortje
Report on New Methods for Data Quality Assurance, Verification and Enrichment
published pages: , ISSN: , DOI: 10.5281/zenodo.3364509
6 2020-02-25
2019 Runnel Veljo; Wijers Agnes
Improving the detection of collection-based citizen science projects
published pages: , ISSN: , DOI: 10.5281/zenodo.3364519
8 2020-02-25
2019 Le Bras, Gwenaël; Chagnoux, Simon; Dillen, Mathias
Specification of data exchange format for transcription platforms
published pages: , ISSN: , DOI: 10.5281/zenodo.2598413
1 2020-02-25
2019 van Egmond, E.M.; Willemse, L.; Runnel, V.; Saarenmaa, H.; Koivunen, A.; Lahti, K.; Livermore, L.
Prioritising scientific and societal needs for data of private natural history collections
published pages: , ISSN: , DOI: 10.5281/zenodo.2582994
1 2020-02-25
2019 Allan Louise E.; Price Benjamin W.; Shchedrina Olha; Dupont Steen; Livermore Laurence; Smith Vince S.
Mass-imaging of microscopic and other slides
published pages: , ISSN: 1314-2828, DOI: 10.5281/zenodo.3364481
Biodiversity Data Journal 1 2020-02-25
2019 Abraham Nieva de la Hidalga, Alex Hardisty
Making Heterogeneous Specimen Data ‘FAIR’: Implementing a digital specimen repository
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37163
Biodiversity Information Science and Standards 3 2020-02-25
2019 Sarah Phillips, Mathias Dillen, Laura Green, Quentin Groom, Marie-Helene Weech
Evaluating Methods for Transcribing Specimen Labels
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37306
Biodiversity Information Science and Standards 3 2020-02-25
2018 Bakker, Hannco P.A.J.; Willemse, Luc; van Egmond, Emily; Casino, Ana; Gödderz, Karsten; Vermeersch, Xavier
Inventory of criteria for prioritization of digitisation of collections focussed on scientific and societal needs
published pages: , ISSN: , DOI: 10.5281/zenodo.2579156
2020-02-25
2019 Runnel Veljo; Hardy Helen; Sanghera Harpreet; Robinson Lucy; Shennan Victoria; Livermore Laurence; De Smedt Sofie
Natural history collections and digital skills of citizens
published pages: , ISSN: , DOI: 10.5281/zenodo.3364541
1 2020-02-25
2019 Mathias Dillen; Quentin Groom; Alex Hardisty
Interoperability of Collection Management Systems
published pages: , ISSN: , DOI: 10.5281/zenodo.3361598
3 2020-02-25
2019 Niels Raes, Emily van Egmond, Ana Casino, Matt Woodburn, Deborah L Paul
Towards a Global Collection Description Standard
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37894
Biodiversity Information Science and Standards 3 2020-02-25
2018 Saarenmaa Hannu; Agosti Donat; Chagnoux Simon; van Egmond Emily; Groom Quenting; Hardisty Alex
ICEDIG - Data Management Plan
published pages: , ISSN: , DOI: 10.5281/zenodo.3364523
5 2020-02-25
2019 Saarenmaa, Hannu; Agosti, Donat; Dillen, Matthias; Egloff, Willi; Gagnier, Pierre-Yves; Groom, Quentin; Hardisty, Alex; Raes, Niels
Report on implementation of open access policies in collection institutions. MILESTONE – MS35
published pages: , ISSN: , DOI: 10.5281/zenodo.2632740
1 2020-02-25
2019 Toivo Ylinampa, Hannu Saarenmaa
ENTODIG-3D
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37473
Biodiversity Information Science and Standards 3 2020-02-25
2019 Luc Willemse, Emily van Egmond, Veljo Runnel, Hannu Saarenmaa, Ana Rubio, Karsten Gödderz, Xavier Vermeersch
Future Challenges in Digitisation of Private Natural History Collections
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37640
Biodiversity Information Science and Standards 3 2020-02-25
2019 van Walsum Myriam; van der Mije Steven; Wijers Agnes; Willemse Luc
State of the art and perspectives on mass imaging of skins and other vertebrate material
published pages: , ISSN: , DOI: 10.5281/zenodo.3364385
9 2020-02-25
2018 Sarah Phillips, Elspeth Haston, Laura Green, Marie-Helene Weech, Robert Cubey, Sally King, Robyn Drinkwater
State of Digitisation and Gap Analysis Surveys
published pages: e25969, ISSN: 2535-0897, DOI: 10.3897/biss.2.25969
Biodiversity Information Science and Standards 2 2020-02-25
2019 Abraham Nieva de la Hidalga, David Owen, Irena Spacic, Paul Rosin, Xianfang Sun
Use of Semantic Segmentation for Increasing the Throughput of Digitisation Workflows for Natural History Collections
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37161
Biodiversity Information Science and Standards 3 2020-02-25
2018 Quentin Groom, Ann Bogaerts, Sofie De Smedt, Sarah Phillips
Crowdsourcing, is it a good option for your collection digitization?
published pages: e25410, ISSN: 2535-0897, DOI: 10.3897/biss.2.25410
Biodiversity Information Science and Standards 2 2020-02-25
2019 Lannom, L., Koureas, D., and Hardisty, A.R.
FAIR Data and Services in Biodiversity Science and Geoscience
published pages: , ISSN: 2641-435X, DOI:
Data Intelligence special issue: ‘FAIR best practices’ 2020-02-25
2018 Hardisty, A. R.
Widening access to European natural science collections with Digital Specimens and Natural Science Identifiers (NSId)
published pages: , ISSN: , DOI:
2020-02-25
2018 CETAF
Communication and dissemination plan
published pages: , ISSN: , DOI:
2020-02-25
2019 Alex Hardisty, Keping Ma, Gil Nelson, Jose Fortes
‘openDS’ – A New Standard for Digital Specimens and Other Natural Science Digital Object Types
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37033
Biodiversity Information Science and Standards 3 2020-02-25
2018 Engledow, Henry, De Smedt, Sofie, Bogaerts, Ann, & Groom, Quentin
An Evaluation of In-house versus Out-sourced Data Capture at the Meise Botanic Garden (BR)
published pages: , ISSN: , DOI: 10.5281/zenodo.1445426
2020-02-25
2018 Fabian Reimeier, Dominik Röpert, Anton Güntsch, Agnes Kirchhoff, Walter G. Berendsohn
Service-based information extraction from herbarium specimens
published pages: e25415, ISSN: 2535-0897, DOI: 10.3897/biss.2.25415
Biodiversity Information Science and Standards 2 2020-02-25
2019 Abraham Nieva de la Hidalga, Nicolas Cazenave, Donat Agosti, Zhengzhe Wu, Mathias Dillen, Lars Nielsen
Use of European Open Science Cloud and National e-Infrastructures for the Long-Term Storage of Digitised Assets from Natural History Collections
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37164
Biodiversity Information Science and Standards 3 2020-02-25
2019 Niels Raes, Emily van Egmond, Wouter Addink, Alex Hardisty
Requirement Analysis for the DiSSCo Research Infrastructure
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37892
Biodiversity Information Science and Standards 3 2020-02-25
2019 Alex Hardisty, Larry Lannom, Dimitris Koureas, Wouter Addink, Claus Weiland
‘The Last Mile’: The registry behind the identifier
published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37034
Biodiversity Information Science and Standards 3 2020-02-25
2018 Dimitrios Koureas, Wouter Addink, Alex Hardisty
Digital Object Cloud for linking natural science collections information; The case of DiSSCo 
published pages: e25474, ISSN: 2535-0897, DOI: 10.3897/biss.2.25474
Biodiversity Information Science and Standards 2 2020-02-25

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