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List_MAPS SIGNED

Training and research in Listeria monocytogenes Adaptation through Proteomic and Transcriptome deep Sequencing Analysis

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

List_MAPS project word cloud

Explore the words cloud of the List_MAPS project. It provides you a very rough idea of what is the project "List_MAPS" about.

educational competitive class care innovative burdensome summer network list mortality transcripts transfer competences skills annum teams monocytogenes transferable animal combination proteomics influence training constructivist collections blended academia theory combining movement exploited secure optimise circuitry world maps food isolates transcriptome co tract composition young mathematics throughput drives understand decipher sequencing recalls phd environmental schools safety bioinformatics learning entrepreneurial replacing gi transcriptional scientific microbiology socio regulatory operation workshops dynamic esr tackle creative highest tool millions epigenetics industry models pathogen mobility farm fork deep courses expertise ubiquitous costing foodborne listeria excellent biology pathogens virulence proposes medical esrs transcriptomics silico

Project "List_MAPS" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITE DE BOURGOGNE Organization address address: ESPLANADE ERASME MAISON DE L UNIVERSITE city: DIJON CEDEX postcode: 21078 website: www.u-bourgogne.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	France [FR]
Project website	http://blog.u-bourgogne.fr/list-maps
Total cost	2˙841˙979 €
EC max contribution	2˙841˙979 € (100%)
Programme	1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
Code Call	H2020-MSCA-ITN-2014
Funding Scheme	MSCA-ITN-ETN
Starting year	2015
Duration (year-month-day)	from 2015-03-01 to 2019-02-28

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITE DE BOURGOGNE UNIVERSITE DE BOURGOGNE Organization address address: ESPLANADE ERASME MAISON DE L UNIVERSITE city: DIJON CEDEX postcode: 21078 website: www.u-bourgogne.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (DIJON CEDEX)	coordinator	394˙313.00
2	INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 website: www.inra.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 07)	participant	525˙751.00
3	NATIONAL UNIVERSITY OF IRELAND GALWAY NATIONAL UNIVERSITY OF IRELAND GALWAY Organization address address: UNIVERSITY ROAD city: Galway postcode: H91 website: www.nuigalway.ie contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IE (Galway)	participant	398˙511.00
4	GENXPRO GMBH GENXPRO GMBH Organization address address: ALTENHOFTER ALLEE 3 city: FRANKFURT postcode: 60438 website: www.genxpro.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (FRANKFURT)	participant	290˙752.00
5	KOBENHAVNS UNIVERSITET KOBENHAVNS UNIVERSITET Organization address address: NORREGADE 10 city: KOBENHAVN postcode: 1165 website: www.ku.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KOBENHAVN)	participant	290˙081.00
6	SYDDANSK UNIVERSITET SYDDANSK UNIVERSITET Organization address address: CAMPUSVEJ 55 city: ODENSE M postcode: 5230 website: www.sdu.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (ODENSE M)	participant	290˙081.00
7	UNIVERSITY COLLEGE CORK - NATIONAL UNIVERSITY OF IRELAND, CORK UNIVERSITY COLLEGE CORK - NATIONAL UNIVERSITY OF IRELAND, CORK Organization address address: WESTERN ROAD city: Cork postcode: T12 YN60 website: www.ucc.ie contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IE (Cork)	participant	265˙674.00
8	WAGENINGEN UNIVERSITY WAGENINGEN UNIVERSITY Organization address address: DROEVENDAALSESTEEG 4 city: WAGENINGEN postcode: 6708 PB website: http://www.wageningenur.nl/nl.htm contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (WAGENINGEN)	participant	255˙374.00
9	BIOFILM CONTROL SAS BIOFILM CONTROL SAS Organization address address: BIOPOLE CLERMONT LIMAGNE city: SAINT-BEAUZIRE postcode: 63360 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (SAINT-BEAUZIRE)	participant	131˙437.00
10	Lactalis Lactalis Organization address address: n.a. city: Paris postcode: n.a. website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (Paris)	partner	0.00
11	LIFE TECHNOLOGIES GmbH LIFE TECHNOLOGIES GmbH Organization address address: Frankfurter Strasse 129 B city: Darmstadt postcode: 64293 website: www.appliedbiosystems.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (Darmstadt)	partner	0.00

Map

Project objective

List_MAPS is a network dedicated to the training of innovative young researchers in the field of Microbiology and Systems Biology. It focuses on Listeria monocytogenes, an ubiquitous pathogen that is in the EU the leading cause of mortality and food recalls due to foodborne pathogens, costing the EU millions of euro per annum in medical care and associated costs in the food sector. ESRs will develop scientific expertise through PhD training, mobility of researchers, summer schools, workshops and transfer-of-knowledge in the areas of Transcriptomics, Proteomics, Sequencing and Systems Biology. Working in this dynamic state-of-the-art field will provide for training of ESRs to the highest level, with co-operation and movement between academia and industry that will enhance ESR training. The overall objective of the research programme is to tackle food safety through the combination of high throughput Epigenetics, Deep sequencing of transcripts, Proteomics, Bioinformatics, Mathematics and Microbiology to decipher the transcriptional regulatory circuitry that drives adaptation and virulence of L. monocytogenes from farm to fork. This information will be exploited to understand how environmental conditions and food composition can influence GI tract adaptation/virulence and to develop an innovative transcriptome-based tool to assess in silico the virulence of large collections of isolates. This developed tool aims at replacing the currently used burdensome animal models. In addition to excellent scientific competences, competitive research requires a range of transferable skills to secure funding, optimise management of working teams and exploit research results. List_MAPS proposes an innovative approach to the training of ESRs in these transferable skills, combining socio-constructivist learning theory with Open Educational Resources to design and provide blended learning courses. This will secure world-class training for creative, entrepreneurial and innovative ESRs.

Deliverables

List of deliverables.
Transcriptome/Subproteo me database	Other	2019-07-22 08:34:23
Effect food characteristics upon virulence	Other	2019-07-22 08:34:29
Effect food constituents upon gene expression	Other	2019-07-22 08:34:36
Database structured	Other	2019-07-22 08:34:23
Workshop 3	Other	2019-07-22 08:34:23
Conference	Other	2019-07-22 08:26:50
Network-wide event year 2	Other	2019-06-20 10:00:45
Mid term review meeting	Other	2019-06-20 10:00:45
Network-wide events year 1	Other	2019-06-20 10:00:45

Take a look to the deliverables list in detail: detailed list of List_MAPS deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2018	M. Villoria Recio, H. Ingmer, M. Halberg Larsen Acid treated chitin attenuates virulence expression in Listeria monocytogenes. Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2018	N. Crespo Tapia, H MW. Den Besten, T. Abee Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan A high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	C Marinho, P. Dos Santos, B. Kallipolitis, D. Garmyn, L. Gal, C. Oâ€™Byrne, P. Piveteau, C. Oâ€™Byrne Unravelling the regulatory role of the oB-dependent non-coding RNA Rli47 in Listeriamonocytogenes.Poster published pages: , ISSN: , DOI:		2019-06-20
2017	P. Dos Santos, D. Sabharwal, P. Menendez-Gil, E.M. Sternkopf Lillebaek, B.H. Kallipolitis A family of sRNAs plays a role in the response of Listeria monocytogenes to heme toxicity. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	T. Santos, L. ThÃ©ron, C. Chambon, D. Viala, D. Centeno, M. HÃ©braud MALDI Mass Spectrometry Imaging and in situ microproteomics of Listeria monocytogenes Biofilms. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	T. Santos, C. Chambon, D. Viala, J. Estebin, M. HÃ©braud Listeria monocytogenes planktonic and sessile cells adaptation to temperatures seen through shotgun proteomics. Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2016	I. Sultan Modelling of Bacterial Transcription Factor Binding Sites. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	N. Crespo Tapia, H MW. Den Besten, T. Abee Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface.Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2018	T. Santos, C. Chambon, D. Viala, J. Esbelin, M. HÃ©braud Listeria monocytogenes planktonic and sessile cells adaptation to different temperatures seen through Shotgun proteomics. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	I. Sultan, S. Schbath, P. Nicolas Statistical modelling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2017	T. Santos, L. ThÃ©ron, C. Chambon, D. Viala, D. Centeno, M. HÃ©braud MALDI Imaging and Profiling Mass Spectrometry approach for the analysis of Listeria monocytogenes biofilms exposed to desiccation. Poster. published pages: , ISSN: , DOI:		2019-06-20
2018	M. Villoria Recio, H. Ingmer, M. Halberg Larsen Chitin attenuates virulence expression in Listeria monocytogenes. Poster. published pages: , ISSN: , DOI:		2019-06-20
2018	A Dorey, B. Oâ€™Donoghue, C. Bennett, A. Conneely, C. Oâ€™Byrne The impact of temperature on the response of L. monocytogenes to visible light. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2017	I. Sultan, P. Nicolas, S. Schbath, V. Fromion Improved Promoter sequence models for de novo Transcription Factor Binding site prediction in bacteria. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	B. Lee, S. Cole, T. Bernardi, S. Badel, L. Guillier, P. Piveteau Association between Listeria monocytogenes genotypes and biofilm formations under food processing environments. Poster published pages: , ISSN: , DOI:		2019-06-20
2017	T. Santos, C. Chambon, D. Viala, J. Esbelin, M. HÃ©braud Adaptation of Listeria monocytogenes to temperature: exploration of intracellular subproteome through shotgun proteomics. Poster published pages: , ISSN: , DOI:		2019-06-20
2017	V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan Role of high-fat diet on host susceptibility to infection with Listeria monocytogenes. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2017	T. Santos Approche protÃ©omique pour explorer lâ€™adaptation de Listeria monocytogenes Ã son environnement. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	P. Dos Santos, D. Sabharwal, J-H Christensen, M Z Brunhede, E M Sternkopf Lillebaek, B.H. Kallipolitis, The small regulatory RNAs LhrC1-5 contribute to the response of Listeria monocytogenes to heme stress. Poster. published pages: , ISSN: , DOI:		2019-06-20
2018	I. Sultan, S. Schbath, P. Nicolas Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	P Dos Santos, D. Sabharwal, J-H Christensen, M Z Brunhede, E M Sternkopf Lillebaek, B.H. Kallipolitis The small regulatory RNAs LhrC1-5 contribute to the response of Listeria monocytogenes to heme stress. Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2018	V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan A high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2018	I. Sultan, S. Schbath, P. Nicolas Statistical modeling of bacterial promoter sequences for regulatory motif discovery using expression data. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan LasA high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Poster. published pages: , ISSN: , DOI:		2019-06-20
2016	Gal L, Boussemart G, Ortiz Camargo A, Garmy D, Piveteau P Investigation of rhizosphere as a niche for Listeria monocytogenes published pages: , ISSN: , DOI:		2019-06-20
2018	T. Santos, C. Chambon, D. Viala, J. Estebin, M. HÃ©braud Listeria monocytogenes planktonic and sessile cells adaptation to temperatures seen through shotgun proteomics. Poster. published pages: , ISSN: , DOI:		2019-06-20
2017	V. Las Heras, K. Govindarajan, S. Joyce, P. Casey, R. Rubio, P. Cotter, C. Hill, C. Gahan Impact of dietary fat content on host susceptibility to Listeria monocytogenes infection. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	I Sultan, S. Schbath, P. Nicolas Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2018	A Dorey, B. Oâ€™Donoghue, C. Bennett, A. Conneely, C. Oâ€™Byrne The impact of temperature on the response of L. monocytogenes to visible light. Poster published pages: , ISSN: , DOI:		2019-06-20
2018	C. Marinho, P. Dos Santos, B. Kallipolitis, D. Garmyn, L. Gal, C. Oâ€™Byrne, P. Piveteau, C. Oâ€™Byrne Unravelling the regulatory role of the oB-dependent non-coding RNA Rli47 in Listeriamonocytogenes . Oral presentation. published pages: , ISSN: , DOI:		2019-06-20
2018	T. Santos, C. Chambon, D. Viala, J. Esbelin, M. HÃ©braud Listeria monocytogenes planktonic and sessile cells adaptation to different temperatures seen through Shotgun proteomics. Poster. published pages: , ISSN: , DOI:		2019-06-20
2017	M. Villoria Recio, M. Halberg Larsen, H. Ingmer The expression of the chitinolytic system of Listeria monocytogenes is subject to different regulation depending on carbon source utilisation including cellobiose and glucose. published pages: , ISSN: , DOI:		2019-06-20
2018	B Lee, S. Cole, T. Bernardi, S. Badel, L. Guillier, P. Piveteau Association between Listeria monocytogenes genotypes and biofilm formations under food processing environements. Oral presentation published pages: , ISSN: , DOI:		2019-06-20
2017	T. Santos DÃ©veloppement dâ€™une approche dâ€™imagerie par spectrometrie de masse pour explorer des biofilms de Listeria monocytogenes exposÃ©s Ã un stress de dÃ©shumidification. Poster. published pages: , ISSN: , DOI:		2019-06-20
2018	Amber Dorey, Catarina Marinho, Pascal Piveteau, Conor O\'Byrne Role and regulation of the stress activated sigma factor sigma B (ÏƒB) in the saprophytic and host-associated life stages of Listeria monocytogenes published pages: , ISSN: , DOI: 10.1016/bs.aambs.2018.11.001	Advances in Applied Microbiology	2019-06-20
2018	PatrÃcia Teixeira dos Santos, Pernille Tholund Larsen, Pilar Menendez-Gil, Eva Maria Sternkopf LillebÃ¦k, Birgitte Haahr Kallipolitis Listeria monocytogenes Relies on the Heme-Regulated Transporter hrtAB to Resist Heme Toxicity and Uses Heme as a Signal to Induce Transcription of lmo1634, Encoding Listeria Adhesion Protein published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.03090	Frontiers in Microbiology 9	2019-06-20
2019	Vanessa Las Heras, Adam G. Clooney, Feargal J. Ryan, Raul Cabrera-Rubio, Pat G. Casey, Cara M. Hueston, Jorge Pinheiro, Justine K. Rudkin, Silvia Melgar, Paul D. Cotter, Colin Hill, Cormac G. M. Gahan Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection published pages: , ISSN: 2049-2618, DOI: 10.1186/s40168-019-0621-x	Microbiome 7/1	2019-06-20
2018	Natalia Crespo Tapia, Heidy M.W. den Besten, Tjakko Abee Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface published pages: 20-27, ISSN: 0168-1605, DOI: 10.1016/j.ijfoodmicro.2018.03.009	International Journal of Food Microbiology 273	2019-06-20
2018	Patricia Teixeira Dos Santos Adaptation of Listeria monocytogenes to transmission between environments published pages: , ISSN: , DOI:		2019-06-20
2018	PatrÃcia T. dos Santos, Pilar Menendez-Gil, Dharmesh Sabharwal, Jens-Henrik Christensen, Maja Z. Brunhede, Eva M. S. LillebÃ¦k, Birgitte H. Kallipolitis The Small Regulatory RNAs LhrC1â€“5 Contribute to the Response of Listeria monocytogenes to Heme Toxicity published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00599	Frontiers in Microbiology 9	2019-06-20
2018	Mette Thorsing, PatrÃcia Teixeira dos Santos, Birgitte Haahr Kallipolitis Small RNAs in major foodborne pathogens: from novel regulatory activities to future applications published pages: 120-128, ISSN: 0958-1669, DOI: 10.1016/j.copbio.2017.08.006	Current Opinion in Biotechnology 49	2019-06-20
2017	P.T. dos Santos, D. Sabharwal, P. Menendez-Gil, E. M. Sternkopf Lillebaek, B. H. Kallipolitis A family of sRNAs plays a role in the response of Listeria monocytogenes to heme toxicity published pages: , ISSN: , DOI:		2019-06-20
2017	N. Crespo Tapia, H.M. W. den Besten, T. Abee Glycerol metabolism induces biofilm formation at the air-liquid interface in Listeria monocytogenes published pages: , ISSN: , DOI:		2019-06-20
2017	A. L. Dorey, A. Oliveira, K. NicAogain, B. O\'Donoghue, C. P. O\'Byrne The effects of growth conditions and secondary environmental stresses on the response of Listeria monocytogenes to visible light published pages: , ISSN: , DOI:		2019-06-20
2016	A.L.Dorey, K.NicAogain, B.O\'Donoghue, C.Bennett, A.Conneely, C.P O\'Byrne Investigation into the Response of Listeria monocytogenes to 470 nm Blue Light published pages: , ISSN: , DOI:		2019-06-20
2017	Bo-Hyung Lee, Michel HÃ©braud, Thierry Bernardi Increased Adhesion of Listeria monocytogenes Strains to Abiotic Surfaces under Cold Stress published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2017.02221	Frontiers in Microbiology 8	2019-06-20
2017	C. Marinho, D. Garmyn, L. Gal, C. O\'Byrne, P. Piveteau oB and agrA regulation in Listeria monocytogenes: effect on survival in soil/rhizosphere under biotic and abiotic conditions published pages: , ISSN: , DOI:		2019-06-20
2017	L. Gal, A. Ortiz Camargo, D. Garmyn, P. Piveteau Ecology of Listeria monocytogenes in soil: effect of the biotic environment on survival and transcriptome reshaping published pages: , ISSN: , DOI:		2019-06-20
2017	A. Ortiz Camargo, L. Gal, A. Spor, S. Gaba, D. Garmyn, P. Piveteau Effect of habitat disturbances on the population dynamics of allochthon L. monocytogenes in soil published pages: , ISSN: , DOI:		2019-06-20
2017	T. Santos, L. ThÃ©ron, D. Centeno, C. Chambon, D. Viala, M. HÃ©braud Development of a MALDI Imaging Mass Spectrometry approach to bacterial proteomics: first application to Listeria monocytogenes biofilms exposed to desiccation published pages: , ISSN: , DOI:		2019-06-20
2017	B. Lee, S. Cole, M. HÃ©braud, T. Bernardi, S. Badel-Berchoux Biofilm formation of Listeria monocytogenes strains in food processing environements published pages: , ISSN: , DOI:		2019-06-20
2016	N. Crespo Tapia, S. Toson, H. Den Besten, T. Abee Impact of carbon sources on Listeria monocytogenes biofilm formation published pages: , ISSN: , DOI:		2019-06-20
2017	I. Sultan, S. Schbath, V. Fromion, P. Nicolas Improved promoter sequence models for de novo transcription factor binding site prediction in bacteria published pages: , ISSN: , DOI:		2019-06-20
2018	Julia Esbelin, Tiago Santos, Michel HÃ©braud Desiccation: An environmental and food industry stress that bacteria commonly face published pages: 82-88, ISSN: 0740-0020, DOI: 10.1016/j.fm.2017.07.017	Food Microbiology 69	2019-06-20
2018	PatrÃcia T. dos Santos, Pilar Menendez-Gil, Dharmesh Sabharwal, Jens-Henrik Christensen, Maja Z. Brunhede, Eva M. S. LillebÃ¦k, Birgitte H. Kallipolitis The Small Regulatory RNAs LhrC1â€“5 Contribute to the Response of Listeria monocytogenes to Heme Toxicity published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00599	Frontiers in Microbiology 9	2019-06-20
2019	Amber L. Dorey, Fabio Giovannercole, Duarte Guerreiro, Catarina Marinho Microbial stress meeting: From systems to molecules and back published pages: 66-70, ISSN: 1871-6784, DOI: 10.1016/j.nbt.2018.09.002	New Biotechnology 49	2019-06-20

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