Explore the words cloud of the VIROGENESIS project. It provides you a very rough idea of what is the project "VIROGENESIS" about.
The following table provides information about the project.
KATHOLIEKE UNIVERSITEIT LEUVEN
|Coordinator Country||Belgium [BE]|
|Total cost||2˙995˙969 €|
|EC max contribution||2˙995˙968 € (100%)|
1. H2020-EU.3.1.6. (Health care provision and integrated care)
|Duration (year-month-day)||from 2015-06-01 to 2018-05-31|
Take a look of project's partnership.
|1||KATHOLIEKE UNIVERSITEIT LEUVEN||BE (LEUVEN)||coordinator||744˙257.00|
|2||ERASMUS UNIVERSITAIR MEDISCH CENTRUM ROTTERDAM||NL (ROTTERDAM)||participant||586˙010.00|
|4||CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS||FR (PARIS)||participant||362˙500.00|
|5||RIJKSINSTITUUT VOOR VOLKSGEZONDHEID EN MILIEU||NL (BILTHOVEN)||participant||282˙753.00|
|6||UNIVERSITY OF FLORIDA||US (GAINESVILLE)||participant||233˙897.00|
|7||THE UNIVERSITY OF MANCHESTER||UK (MANCHESTER)||participant||231˙050.00|
|8||UNIVERSITY OF KWAZULU-NATAL||ZA (WESTVILLE)||participant||150˙000.00|
NGS analysis pipelines are rapidly becoming part of the routine repertoire of research, clinical and public health laboratories in the public sector and private industry. Middle East Respiratory Syndrome-coronavirus (MERS-CoV) is only one example of the many recent virus discoveries made through analysis of next-generation sequencing (NGS) data. Yet, only a small part of the several millions of short-length sequence fragments generated by NGS machineries, many of which are expected to be of viral origin, can be analysed with current methods in bioinformatics. Even for well-known (pathogenic) viruses, proper epidemiological analyses are becoming more and more difficult due to the lack of bioinformatics tools that can handle the large and growing size of datasets. The VIROGENESIS consortium will overcome the most pressing bioinformatics obstacles to making full use of NGS by developing a software platform for end-users with tools underpinned by novel algorithms, models and bioinformatics methods. The speed and flexibility of the tools will make it possible to run analyses on a daily basis for a variety of subjects, including diagnostics, phylogeography, phylodynamics and transmission of drug resistance. The tools will be piloted and incorporated in the many available bioinformatics pipelines and software programmes used in the field. We will make our tools available in a modular, free and open source software platform that offers opportunities to SME’s to further exploit this market. The VIROGENESIS consortium brings together leading European academic and private small and medium enterprises (SME) bioinformatics developers and virology end-users who initiated this project in response to a clear interest from EMBL, NCBI and the Global Microbial Identifier (GMI) platform.
|Pan-viral typing tool||Other||2019-10-03 18:20:54|
|Phylogenetic analysis method for reticulation||Other||2019-10-03 18:20:54|
|GUI Pan-viral typing tool for pilot study||Other||2019-10-03 18:20:54|
|GUI Epidemiological analysis tools for pilot study||Other||2019-10-03 18:20:54|
|Report pilot studies||Documents, reports||2019-10-03 18:20:54|
|Classification tool||Other||2019-10-03 18:20:54|
|Virome comparison tool||Other||2019-10-03 18:20:54|
|NGS assembly tool||Other||2019-10-03 18:20:54|
|GUI entire platform for pilot study||Other||2019-10-03 18:20:54|
|Report on use of HPM for NGS data analysis||Other||2019-10-03 18:20:54|
|Colloquium||Documents, reports||2019-10-03 18:20:54|
|Training module NGS data analysis||Documents, reports||2019-10-03 18:20:54|
|GUI NGS assembly tool for pilot study||Other||2019-10-03 18:20:54|
|GUI Virome comparison tools for pilot study||Other||2019-10-03 18:20:54|
|Epidemiological tracing tool||Other||2019-10-03 18:20:54|
|Plan for the dissemination and exploitation of results||Documents, reports||2019-10-03 18:20:54|
Take a look to the deliverables list in detail: detailed list of VIROGENESIS deliverables.
|year||authors and title||journal||last update|
B. Vrancken, D. Adachi, M. Benedet, A. Singh, R. Read, S. Shafran, G.D. Taylor, K. Simmonds, C. Sikora, P. Lemey, C.L. Charlton, J.W. Tang
The multi-faceted dynamics of HIV-1 transmission in Northern Alberta: A combined analysis of virus genetic and public health data
published pages: 100-105, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2017.04.005
|Infection, Genetics and Evolution 52||2019-10-03|
Filip Bielejec, Guy Baele, Bram Vrancken, Marc A. Suchard, Andrew Rambaut, Philippe Lemey
SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes
published pages: 2167-2169, ISSN: 0737-4038, DOI: 10.1093/molbev/msw082
|Molecular Biology and Evolution 33/8||2019-10-03|
Bas B. Oude Munnink, My V. T. Phan, Lia van der Hoek, Paul Kellam, Matthew Cotten
Genome Sequences of a Novel Vietnamese Bat Bunyavirus
published pages: e01366-16, ISSN: 2169-8287, DOI: 10.1128/genomeA.01366-16
|Genome Announcements 4/6||2019-10-03|
Rebecca Rose, Bede Constantinides, Avraam Tapinos, David L Robertson, Mattia Prosperi
Challenges in the analysis of viral metagenomes
published pages: vew022, ISSN: 2057-1577, DOI: 10.1093/ve/vew022
|Virus Evolution 2/2||2019-10-03|
Franco Milicchio, Rebecca Rose, Jiang Bian, Jae Min, Mattia Prosperi
Visual programming for next-generation sequencing data analytics
published pages: , ISSN: 1756-0381, DOI: 10.1186/s13040-016-0095-3
|BioData Mining 9/1||2019-10-03|
Ana B. Abecasis, Marta Pingarilho, Anne-Mieke Vandamme
Phylogenetic analysis as a forensic tool in HIV transmission investigations
published pages: 1, ISSN: 0269-9370, DOI: 10.1097/QAD.0000000000001728
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The information about "VIROGENESIS" are provided by the European Opendata Portal: CORDIS opendata.