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PGEPP

Are there rules to the game? Patterns of Genome Evolution in Paleopolyploid Plants

Total Cost €

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EC-Contrib. €

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Partnership

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Project "PGEPP" data sheet

The following table provides information about the project.

Coordinator
WAGENINGEN UNIVERSITY 

Organization address
address: DROEVENDAALSESTEEG 4
city: WAGENINGEN
postcode: 6708 PB
website: http://www.wageningenur.nl/nl.htm

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Netherlands [NL]
 Project website http://www.wur.nl/en/Expertise-Services/Chair-groups/Plant-Sciences/Biosystematics-Group/Research.htm
 Total cost 177˙598 €
 EC max contribution 177˙598 € (100%)
 Programme 1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
 Code Call H2020-MSCA-IF-2014
 Funding Scheme MSCA-IF-EF-ST
 Starting year 2015
 Duration (year-month-day) from 2015-04-01   to  2017-07-28

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    WAGENINGEN UNIVERSITY NL (WAGENINGEN) coordinator 177˙598.00

Map

 Project objective

Polyploidy events (i.e. the process of genome doubling that gives rise to organisms with multiple sets of chromosomes) have had a strong impact on land plants diversification, adaptation and speciation. Genomic investigations have found that polyploidy is ubiquitous among angiosperms and have identified independent lineage-specific ancient polyploidizations. Traces of these polyploidy events are still present, although duplication events are followed by massive gene loss and chromosome structural rearrangements. However, the mechanisms/principles that govern these genomic changes following polyploidization are still poorly understood. Our project aims to overcome this limitation by analyzing genomic changes following polyploidization in three plant families among which two are of particular agricultural and economical importance. Specifically I will test if common mechanisms (e.g. presence of repetitive elements) are involved in chromosomal rearrangements. I will combine physical mapping approaches (molecular cytogenetic and optical mapping) and sequence analysis to characterize and compare genomic collinearity (synteny) between genomes of Brassicaceae, Cleomaceae and Solanaceae species. This work will improve our understanding of genome evolution by looking mechanisms of chromosomal changes and will improve synteny analysis between model plants such as Arabidopsis and more distant crops for homolog identification.

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The information about "PGEPP" are provided by the European Opendata Portal: CORDIS opendata.

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