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ELIXIR-EXCELERATE project deliverables

The page lists 55 deliverables related to the research project "ELIXIR-EXCELERATE".

 List of Deliverables

ELIXIR-EXCELERATE: list of downloadable deliverables.
title and desprition type last update

D6.1 Specific marine databases made publicly available

Specific marine databases made publicly available (Task 6.2)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D6.2 Report on comprehensive metagenomic data standards environment

Report on comprehensive metagenomic data standards environment (Task 6.1)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D8.4 Report on the ELIXIR workshop organized with the rare-disease communities

Report on the ELIXIR workshop organized with the rare-disease communities - year 2 (Task 8.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D2.1 Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments

Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments (Tasks 2.2, 2.3, 2.4)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D13.2 Report on ELIXIR’s Communication Strategy

Report on ELIXIR’s Communication Strategy (Task 13.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D9.4 Report on implementation of cloud access and secure user and data management

Report on implementation of cloud access and secure user and data management

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D1.6 Workbench integration enabler: implementation & evaluation of impact

Workbench integration enabler: implementation & evaluation of impact (Task 1.3)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D4.1 ELIXIR Technical Services Roadmap

ELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services registry and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D7.2 Phenotypic data exposed through integrating API by all participants

Phenotypic data exposed through integrating API by all participants (Task 7.4).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases

A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases (Task 2.4).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D9.2 Report on implementation of submissions interface and API

Report on implementation of submissions interface and API (Task 9.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D1.5 Incorporation of monitoring statistics and benchmarking results in registry releases

Incorporation of monitoring statistics and benchmarking results in registry releases (Task 1.2)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D9.5 Report on implementation of ELSI and policy consideration for controlled access data

Report on implementation of ELSI and policy consideration for controlled access data

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D1.2 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis

Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 2

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions

Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions (Task 11.1)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D10.4 ELIXIR Advanced workshops on genome annotation

ELIXIR Advanced workshops on genome annotation - Month 22 (Task 10.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D7.1 Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archives

Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archives (Task 7.1, task 7.2 and task 7.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D13.1 Release of a live ELIXIR Communication Strategy, including annual updates thereafter

Release of a live ELIXIR Communication Strategy, including annual updates thereafter - Month 6 (Task 13.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D11.2 Report on the training needs identified across the ELIXIR community

Report on the training needs identified across the ELIXIR community (Task 11.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D8.3 Report on the ELIXIR workshop organized with the rare-disease communities

Report on the ELIXIR workshop organized with the rare-disease communities - year 1 (Task 8.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D3.1 List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource” and “ELIXIR Core Resource” labels, to allow construction and extension of the ELIXIR Resource portfolio

List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource” and “ELIXIR Core Resource” labels, to allow construction and extension of the ELIXIR Resource portfolio (Task 3.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D9.3 Report on implementation of value-added user applications and cohort integration

Report on implementation of value-added user applications and cohort integration

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D8.1 Portfolio of ELIXIR data resources and tools for the rare diseases communities

Portfolio of ELIXIR data resources and tools for the rare diseases communities (Task 8.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease field

Documentation of the tools for the data manipulation and standard conversions in the rare-disease field (Task 8.2).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D13.3 Report on ELIXIR’s International Strategy

Report on ELIXIR’s International Strategy (Task 13.4).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas

A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas (Task 2.3, task 2.4).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D1.1 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis

Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 1

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D12.2 ELIXIR Handbook of Operations

ELIXIR Handbook of Operations (Task 12.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D10.3 ELIXIR Advanced workshops on genome annotation

ELIXIR Advanced workshops on genome annotation - Month 4 (Task 10.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D10.5 A Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that country

A Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that country

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D9.1 Requirements analysis document

Requirements analysis document

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations

A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations (Task 3.3)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D5.1 Interoperability Implementation Regulations

Interoperability Implementation Regulations. A set of standards, rules, controlled vocabularies, authorised unique identifiers and interoperable service APIs for the data repositories and biological knowledge bases agreed and implemented in the field with WP6 to 9, and WP3; resources registered in BioSharing; BioCatalogue and BioRegistry (WP1); ontologies accessible via Ontology Lookup Services (Task 5.1)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D4.2 Updated ELIXIR Technical Services Roadmap

Updated ELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services portfolio and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-04-23

D10.2 Blueprint on how to set up an ELIXIR data Node

Blueprint on how to set up an ELIXIR data Node (Task 10.2).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D7.3 Implementation of BRAPI (Plant Breeding API) at all participating nodes

Implementation of BRAPI (Plant Breeding API) at all participating nodes

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D5.3 Bring Your Own Data

Bring Your Own Data 8 delivered workshops and established roll-out programme across WP10 Data Node capability network; materials deposited on WP11 TeSS (Task 5.3)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D6.5 Improvement and Application of Eukaryotic Gene

We will release the first set of the reference eukaryotic gene catalog including 292 species of the MMETSP project and 78 species of Roscoff Culture Collection. Thereafter, we will investigate the production of combined assemblies (assemblies built from a unique taxa, but under a range of RNAseq conditions) from MMETSP dataset. We plan to produce 119 new eukaryotic assemblies. Additionally, works we will identify (probable) contamination and/or mixed species populations within eukaryotic assemblies, based on functional annotation (produced by EBI pipeline) and contigs binning. (Rob Finn, EBI and Nils Peder Willassen, UiT).
EMBL-EBI, FR

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D1.8 Matchmaking Service: implementation & evaluation of impact

Matchmaking Service: implementation & evaluation of impact

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D13.4 Report on the impact of the Innovation and SME programme on industry users

Report on the impact of the Innovation and SME programme on industry users (Task 13.2).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D10.1 Communities of” Good Practice” and Protocols of Transfer

Communities of” Good Practice” and Protocols of Transfer (Task 10.1).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D4.4 ELIXIR Technical Services document

ELIXIR Technical Services document: Describes the ELIXIR Technical Services being offered through the cooperating service providers (ELIXIR Nodes and public e-infrastructures) (Task 4.1, task 4.2, task 4.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D8.7 Options for sustainability of RD-Connect within the scope of ELIXIR

Options for sustainability of RD-Connect within the scope of ELIXIR

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D8.6 Documentation on adequate quality reporting standards for genomics datasets

Documentation on adequate quality reporting standards for genomics datasets

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D1.3 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis

Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 3

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D3.3 Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub

Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub (Task 3.2).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D12.4 Updated long- term strategy for the sustainability of data management

Updated long- term strategy for the sustainability of data management

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D1.7 Description of the registry user helpdesk & impact on user support via community forums

Description of the registry user helpdesk & impact on user support via community forums

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D8.5 Report on the ELIXIR workshops organised with the rare-disease communities

Report on the ELIXIR workshops organised with the rare-disease communities

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

download deliverable 

Documents, reports 2020-02-12

D1.4 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis

Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 4

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D4.3 ELIXIR Technical Services Roadmap

ELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services portfolio and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

download deliverable 

Documents, reports 2020-02-12

D11.3 Report on training provided across the ELIXIR community

Report on training provided across the ELIXIR community (Task 11.2).

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D6.3 Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data

Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data (Task 6.3 and task 6.4)

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D6.4 Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples

The increased depth of sequences and improved algorithms have seen an increase in the number of marine metagenomics datasets that can be assembled. However, no metrics are in place to indicate what constitutes a good assembly. Furthermore, the community is producing more and more MAGs from these assemblies. Papers by Parks et al and Bowers et al have provided a range on different ways of assessing the quality of a MAG, with the former also beginning to outline a set of standards that should be adopted. We will assess these standards against MAGs produced from Marine samples (from both our own and publicly deposited MAGs). We will report on the criteria that we believe should be achieved from inclusion in Marine data resources, such as EBI metagenomics or the MAR databases. (Rob Finn, EBI and Nils Peder Willassen, UiT).
EMBL-EBI, NO, FR

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

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Documents, reports 2020-02-12

D2.4 Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results

Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results

Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015

download deliverable 

Documents, reports 2020-02-12