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ELIXIR-EXCELERATE

ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.

Total Cost €

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EC-Contrib. €

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Project "ELIXIR-EXCELERATE" data sheet

The following table provides information about the project.

Coordinator
EUROPEAN MOLECULAR BIOLOGY LABORATORY 

Organization address
address: Meyerhofstrasse 1
city: HEIDELBERG
postcode: 69117
website: http://www.embl.de

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Germany [DE]
 Project website https://www.elixir-europe.org/excelerate
 Total cost 19˙051˙482 €
 EC max contribution 19˙051˙482 € (100%)
 Programme 1. H2020-EU.1.4.1.1. (Developing new world-class research infrastructures)
 Code Call H2020-INFRADEV-1-2015-1
 Funding Scheme RIA
 Starting year 2015
 Duration (year-month-day) from 2015-09-01   to  2019-08-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    EUROPEAN MOLECULAR BIOLOGY LABORATORY DE (HEIDELBERG) coordinator 5˙236˙621.00
2    SIB INSTITUT SUISSE DE BIOINFORMATIQUE CH (GENEVE) participant 1˙456˙270.00
3    STICHTING DTL PROJECTS NL (UTRECHT) participant 1˙295˙060.00
4    DANMARKS TEKNISKE UNIVERSITET DK (KGS LYNGBY) participant 1˙111˙250.00
5    CSC-TIETEEN TIETOTEKNIIKAN KESKUS OY FI (ESPOO) participant 894˙997.00
6    UPPSALA UNIVERSITET SE (UPPSALA) participant 785˙550.00
7    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 635˙000.00
8    BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION ES (BARCELONA) participant 558˙477.00
9    TARTU ULIKOOL EE (TARTU) participant 557˙502.00
10    THE UNIVERSITY OF MANCHESTER UK (MANCHESTER) participant 528˙281.00
11    Masarykova univerzita CZ (BRNO STRED) participant 507˙500.00
12    UNIVERSITETET I TROMSOE - NORGES ARKTISKE UNIVERSITET NO (TROMSO) participant 464˙140.00
13    FUNDACIO CENTRE DE REGULACIO GENOMICA ES (BARCELONA) participant 440˙000.00
14    CONSIGLIO NAZIONALE DELLE RICERCHE IT (ROMA) participant 339˙000.00
15    UNIVERZA V LJUBLJANI SI (LJUBLJANA) participant 329˙537.00
16    THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE UK (CAMBRIDGE) participant 315˙165.00
17    VIB BE (ZWIJNAARDE - GENT) participant 258˙625.00
18    THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD UK (OXFORD) participant 242˙957.00
19    UNIVERSITETET I BERGEN NO (BERGEN) participant 226˙301.00
20    FUNDACIO INSTITUT DE RECERCA BIOMEDICA (IRB BARCELONA) ES (BARCELONA) participant 198˙000.00
21    USTAV ORGANICKE CHEMIE A BIOCHEMIE, AV CR, V.V.I. CZ (PRAHA 6) participant 188˙350.00
22    FUNDACAO CALOUSTE GULBENKIAN PT (LISBOA) participant 186˙250.00
23    EARLHAM INSTITUTE UK (NORWICH) participant 183˙750.00
24    INSTITUT PASTEUR FR (PARIS CEDEX 15) participant 182˙400.00
25    INESC ID - INSTITUTO DE ENGENHARIADE SISTEMAS E COMPUTADORES, INVESTIGACAO E DESENVOLVIMENTO EM LISBOA PT (LISBOA) participant 173˙750.00
26    UNIVERSIDAD POMPEU FABRA ES (BARCELONA) participant 160˙056.00
27    WEIZMANN INSTITUTE OF SCIENCE IL (REHOVOT) participant 137˙741.00
28    UNIVERSITETET I OSLO NO (OSLO) participant 130˙000.00
29    INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT FR (PARIS CEDEX 07) participant 125˙000.00
30    CESNET ZAJMOVE SDRUZENI PRAVNICKYCH OSOB CZ (PRAHA 6) participant 123˙750.00
31    CENTRE DE COOPERATION INTERNATIONALE EN RECHERCHE AGRONOMIQUE POUR LEDEVELOPPEMENT - C.I.R.A.D. EPIC FR (PARIS) participant 120˙846.00
32    NACIONALNI INSTITUT ZA BIOLOGIJO SI (LJUBLJANA) participant 120˙632.00
33    NORGES TEKNISK-NATURVITENSKAPELIGE UNIVERSITET NTNU NO (TRONDHEIM) participant 120˙000.00
34    HERIOT-WATT UNIVERSITY UK (EDINBURGH) participant 105˙432.00
35    INSTITUTO DE BIOLOGIA EXPERIMENTAL E TECNOLOGICA PT (OEIRAS) participant 100˙000.00
36    CENTRO DE CIENCIAS DO MAR DO ALGARVE PT (FARO) participant 80˙532.00
37    BIOMEDICAL SCIENCES RESEARCH CENTER ALEXANDER FLEMING EL (VARI-ATHENS) participant 61˙498.00
38    THE HEBREW UNIVERSITY OF JERUSALEM IL (JERUSALEM) participant 49˙759.00
39    ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS EL (MAROUSSI) participant 43˙750.00
40    IDRYMA TECHNOLOGIAS KAI EREVNAS EL (IRAKLEIO) participant 43˙750.00
41    UNIVERSIDAD DE MALAGA ES (MALAGA) participant 43˙750.00
42    AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS ES (MADRID) participant 40˙000.00
43    FUNDACIO INSTITUT MAR D INVESTIGACIONS MEDIQUES IMIM ES (BARCELONA) participant 40˙000.00
44    THE UNIVERSITY OF EDINBURGH UK (EDINBURGH) participant 37˙258.00
45    FUNDACION CENTRO NACIONAL DE INVESTIGACIONES ONCOLOGICAS CARLOS III ES (MADRID) participant 28˙537.00
46    FUNDACION PUBLICA ANDALUZA PROGRESO Y SALUD ES (SEVILLA) participant 27˙425.00
47    FUNDACION DE LA COMUNIDAD VALENCIANA CENTRO DE INVESTIGACION PRINCIPEFELIPE ES (VALENCIA) participant 12˙575.00
48    LINKOPINGS UNIVERSITET SE (LINKOPING) participant 4˙450.00

Map

 Project objective

The life sciences are undergoing a transformation. Modern experimental tools study the molecules, reactions, and organisation of life in unprecedented detail. The precipitous drop in costs for high-throughput biology has enabled European research laboratories to produce an ever-increasing amount of data. Life scientists are rapidly generating the most complex and heterogeneous datasets that science can currently imagine, with unprecedented volumes of biological data to manage. Data will only generate long-term value if it is Findable, Accessible, Interoperable and Re-usable (FAIR). This requires a scalable infrastructure that connects local, national and European efforts and provides standards, tools and training for data stewardship. Formally established as a legal entity in January 2014, ELIXIR - the European life science Infrastructure for Biological Information - is a distributed organisation comprising national bioinformatics research infrastructures and the European Bioinformatics Institute (EMBL-EBI). This coordinated infrastructure includes data standards, exchange, interoperability, storage, security and training. Recognising the importance of a data foundation for European life sciences, the ESFRI and European Council named ELIXIR as one of Europe’s priority Research Infrastructures. In response ELIXIR have developed ELIXIR-EXCELERATE. The project will fast-track ELIXIR’s early implementation phase by i) coordinate and enhance existing resources into a world-leading data service for academia and industry, ii) grow bioinformatics capacity and competence across Europe, and iii) complete the management processes needed for a large distributed infrastructure. ELIXIR-EXCELERATE will deliver a step-change in the life sciences. It will enable cost-effective and sustainable management and re-use of data for millions of users across the globe and improve the competitiveness of European life science industries through accessible data and robust standards and tools.

 Deliverables

List of deliverables.
D6.1 Specific marine databases made publicly available Documents, reports 2020-04-23 23:18:59
D6.2 Report on comprehensive metagenomic data standards environment Documents, reports 2020-04-23 23:18:59
D8.4 Report on the ELIXIR workshop organized with the rare-disease communities Documents, reports 2020-04-23 23:18:59
D2.1 Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments Documents, reports 2020-04-23 23:19:00
D13.2 Report on ELIXIR’s Communication Strategy Documents, reports 2020-04-23 23:19:00
D9.4 Report on implementation of cloud access and secure user and data management Documents, reports 2020-04-23 23:18:59
D1.6 Workbench integration enabler: implementation & evaluation of impact Documents, reports 2020-04-23 23:19:00
D4.1 ELIXIR Technical Services Roadmap Documents, reports 2020-04-23 23:18:59
D7.2 Phenotypic data exposed through integrating API by all participants Documents, reports 2020-04-23 23:18:59
D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases Documents, reports 2020-04-23 23:18:59
D9.2 Report on implementation of submissions interface and API Documents, reports 2020-04-23 23:18:59
D1.5 Incorporation of monitoring statistics and benchmarking results in registry releases Documents, reports 2020-04-23 23:19:00
D9.5 Report on implementation of ELSI and policy consideration for controlled access data Documents, reports 2020-04-23 23:18:59
D1.2 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis Documents, reports 2020-04-23 23:18:59
D11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions Documents, reports 2020-04-23 23:18:59
D10.4 ELIXIR Advanced workshops on genome annotation Documents, reports 2020-04-23 23:18:59
D7.1 Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archives Documents, reports 2020-04-23 23:18:59
D13.1 Release of a live ELIXIR Communication Strategy, including annual updates thereafter Documents, reports 2020-04-23 23:19:00
D11.2 Report on the training needs identified across the ELIXIR community Documents, reports 2020-04-23 23:18:59
D8.3 Report on the ELIXIR workshop organized with the rare-disease communities Documents, reports 2020-04-23 23:18:59
D3.1 List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource” and “ELIXIR Core Resource” labels, to allow construction and extension of the ELIXIR Resource portfolio Documents, reports 2020-04-23 23:19:00
D9.3 Report on implementation of value-added user applications and cohort integration Documents, reports 2020-04-23 23:18:59
D8.1 Portfolio of ELIXIR data resources and tools for the rare diseases communities Documents, reports 2020-04-23 23:18:59
D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease field Documents, reports 2020-04-23 23:18:59
D13.3 Report on ELIXIR’s International Strategy Documents, reports 2020-04-23 23:19:00
D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas Documents, reports 2020-04-23 23:18:59
D1.1 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis Documents, reports 2020-04-23 23:18:59
D12.2 ELIXIR Handbook of Operations Documents, reports 2020-04-23 23:19:00
D10.3 ELIXIR Advanced workshops on genome annotation Documents, reports 2020-04-23 23:18:59
D10.5 A Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that country Documents, reports 2020-04-23 23:18:59
D9.1 Requirements analysis document Documents, reports 2020-04-23 23:18:59
D3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations Documents, reports 2020-04-23 23:19:00
D5.1 Interoperability Implementation Regulations Documents, reports 2020-04-23 23:18:59
D4.2 Updated ELIXIR Technical Services Roadmap Documents, reports 2020-04-23 23:18:59
D10.2 Blueprint on how to set up an ELIXIR data Node Documents, reports 2020-02-12 15:36:54
D7.3 Implementation of BRAPI (Plant Breeding API) at all participating nodes Documents, reports 2020-02-12 15:36:55
D5.3 Bring Your Own Data Documents, reports 2020-02-12 15:36:52
D6.5 Improvement and Application of Eukaryotic Gene Documents, reports 2020-02-12 15:37:48
D1.8 Matchmaking Service: implementation & evaluation of impact Documents, reports 2020-02-12 15:37:42
D13.4 Report on the impact of the Innovation and SME programme on industry users Documents, reports 2020-02-12 15:37:46
D10.1 Communities of” Good Practice” and Protocols of Transfer Documents, reports 2020-02-12 15:36:52
D4.4 ELIXIR Technical Services document Documents, reports 2020-02-12 15:36:20
D8.7 Options for sustainability of RD-Connect within the scope of ELIXIR Documents, reports 2020-02-12 15:37:48
D8.6 Documentation on adequate quality reporting standards for genomics datasets Documents, reports 2020-02-12 15:37:46
D1.3 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis Documents, reports 2020-02-12 15:36:53
D3.3 Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub Documents, reports 2020-02-12 15:37:49
D12.4 Updated long- term strategy for the sustainability of data management Documents, reports 2020-02-12 15:36:57
D1.7 Description of the registry user helpdesk & impact on user support via community forums Documents, reports 2020-02-12 15:37:49
D8.5 Report on the ELIXIR workshops organised with the rare-disease communities Documents, reports 2020-02-12 15:37:25
D1.4 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis Documents, reports 2020-02-12 15:36:54
D4.3 ELIXIR Technical Services Roadmap Documents, reports 2020-02-12 15:36:15
D11.3 Report on training provided across the ELIXIR community Documents, reports 2020-02-12 15:36:56
D6.3 Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data Documents, reports 2020-02-12 15:36:14
D6.4 Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples Documents, reports 2020-02-12 15:36:55
D2.4 Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results Documents, reports 2020-02-12 15:36:51

Take a look to the deliverables list in detail:  detailed list of ELIXIR-EXCELERATE deliverables.

 Publications

year authors and title journal last update
List of publications.
2019 Capella-Gutierrez, Salvador; Haas, Juergen; Gelpí, Josep Ll.; Fernández, José Maria
ELIXIR-EXCELERATE D2.4: Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results
published pages: , ISSN: , DOI: 10.5281/zenodo.3362116
1 2020-04-23
2019 Blanchet, Christophe; Borg, Mikael; Chien, Jinny; Codo, Laia; Gelpi, Jose Ll.; GonzaLEZ, Montserrat; Laitinen, Jarno; Lappalainen, Ilkka; Linden, Mikael; Matyska, Ludek; Newhouse, Steven; Nyrönen, Tommi; Prochazka, Michael; Ruda, Mirek; Salminen, Harri; Staiger, Christine; Tedds, Jonathan; Törnroos, Juha; Varma, Susheel; Wildish, Tony
ELIXIR-EXCELERATE D4.4: ELIXIR Technical Services document
published pages: , ISSN: , DOI: 10.5281/zenodo.3381598
1 2020-04-23
2018 Oliver S. Smart, Vladimír Horský, Swanand Gore, Radka Svobodová Vařeková, Veronika Bendová, Gerard J. Kleywegt, Sameer Velankar
Validation of ligands in macromolecular structures determined by X-ray crystallography
published pages: 228-236, ISSN: 2059-7983, DOI: 10.1107/S2059798318002541
Acta Crystallographica Section D Structural Biology 74/3 2020-04-23
2019 Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Kinza Rian, Francisco Salavert, Miguel A. Pujana, Francesca Mateo, Carmen Herranz, Jose Carbonell-Caballero, Joaquín Dopazo
Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
published pages: , ISSN: 2056-7189, DOI: 10.1038/s41540-019-0087-2
npj Systems Biology and Applications 5/1 2020-04-23
2019 Persson, Bengt; Jareborg, Niclas
ELIXIR-EXCELERATE D10.2: Blueprint on how to set up an ELIXIR data Node
published pages: , ISSN: , DOI: 10.5281/zenodo.3381599
3 2020-04-23
2019 E. Chacón‐Solano, C. León, F. Díaz, F. García‐García, M. García, M.J. Escámez, S. Guerrero‐Aspizua, C.J. Conti, Á. Mencía, L. Martínez‐Santamaría, S. Llames, M. Pévida, J. Carbonell‐Caballero, J.A. Puig‐Butillé, R. Maseda, S. Puig, R. de Lucas, E. Baselga, F. Larcher, J. Dopazo, M. Río
Fibroblast activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer‐prone genodermatoses
published pages: 512-522, ISSN: 0007-0963, DOI: 10.1111/bjd.17698
British Journal of Dermatology 181/3 2020-04-23
2019 Martin, Corrine; Smith, Andrew; Blomberg, Niklas; Velek, Premysl; Balzano, Melissa; Berman, Maia; Cook, Martin; Coppens, Frederik; Drysdale, Rachel; Durinx, Christine; Hancock, John; Harrow, Jennifer; Lanfear, Jerry; Lauer, Katharina; Palagi, Patricia; Pommier, Cyril; Repo, Susanna; Sansone, Susanna; Sarntivijai, Sirarat; Saunders, Gary; Tedds, Jonathan; van Gelder, Celia
ELIXIR-EXCELERATE D13.3: Fast-track ELIXIR implementation and drive early user exploitation across the life sciences
published pages: , ISSN: , DOI: 10.5281/zenodo.3384778
3 2020-04-23
2019 Durinx, Christine; Drysdale, Rachel; McEntyre, Jo; Stockinger, Heinz; Haas, Juergen; Redaschi, Nicole; Venkatesan, Aravind; Gruhl, Franziska; Cook, Chuck
ELIXIR-EXCELERATE D3.3: Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub
published pages: , ISSN: , DOI: 10.5281/zenodo.3362082
3 2020-04-23
2019 Miguel, Célia; Pommier, Cyril; Finkers, Richard; Coppens, Frederik; Bolser, Dan; Ruiz, Manuel; Adam-Blondon, Anne-Françoise; Gruden, Kristina; Ramšak, Živa; Papoutsoglou, Evangelia; Faria, Daniel; Costa, Bruno; Chaves, Inês
ELIXIR-EXCELERATE D7.3: Implementation of BRAPI (Plant Breeding API) at all participating nodes
published pages: , ISSN: , DOI: 10.5281/zenodo.3354265
1 2020-04-23
2019 Lantz, Henrik; Persson, Bengt; Vondrášek, Jirí; Leskošek, Brane
\"ELIXIR-EXCELERATE D10.1: Communities of \"\"Good Practice\"\" and Protocols of Transfer\"
published pages: , ISSN: , DOI: 10.5281/zenodo.3354328
3 2020-04-23
2019 Lauer, Katharina; Smith, Andrew
ELIXIR-EXCELERATE D13.4 The impact of the Innovation and SME Programme on industry users
published pages: , ISSN: , DOI: 10.5281/zenodo.3357734
1 2020-04-23
2018 Oliver S. Smart, Vladimír Horský, Swanand Gore, Radka Svobodová Vařeková, Veronika Bendová, Gerard J. Kleywegt, Sameer Velankar
Worldwide Protein Data Bank validation information: usage and trends
published pages: 237-244, ISSN: 2059-7983, DOI: 10.1107/S2059798318003303
Acta Crystallographica Section D Structural Biology 74/3 2020-04-23
2019 Kalaš, Matúš; Plantard, Laure; Sladoje, Nataša; Lindblad, Joakim; Kirschmann, Moritz,; Jones, Martin; Chessel, Anatole; Scholz, Leandro,; Rössler, Fabienne; Dufour, Alexandre; Bogovic, John; Zhang, Chong; Waithe, Dominic; Sampaio, Paula; Paavolainen, Lassi; Hörl, David; Munck, Sebastien; Golani, Ofra; Moore, Josh; Gaignard, Alban; Levet, Florian; Paul-Gilloteaux, Perrine; Ison, Jon; Miura, K
EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats
published pages: , ISSN: , DOI:
NEUBIAS, Feb 2019, Luxembourg, Luxembourg 1 2020-04-23
2019 DOMINGUEZ DEL ANGEL Victoria; SAND Olivier; MEDIGUE Claudine; VAN HELDEN Jacques
2017-2018 Activity Report, FRENCH INSTITUTE OF BIOINFORMATICS
published pages: , ISSN: , DOI: 10.5281/zenodo.3520131
2 2020-04-23
2016 Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt
published pages: baw098, ISSN: 1758-0463, DOI: 10.1093/database/baw098
Database 2016 2020-04-23
2018 Lantz, Henrik; Leskosek, Brane
ELIXIR Advanced workshops on genome annotation
published pages: , ISSN: , DOI: 10.5281/zenodo.1321915
2020-04-23
2016 Francisco Salavert, Marta R. Hidago, Alicia Amadoz, Cankut Çubuk, Ignacio Medina, Daniel Crespo, Jose Carbonell-Caballero, Joaquín Dopazo
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models
published pages: W212-W216, ISSN: 0305-1048, DOI: 10.1093/nar/gkw369
Nucleic Acids Research 44/W1 2020-04-23
2017 Jaako Vilo; Ondřej Hradil; Babis Savakis; Brane Leskosek
A Node report on regional priorities and channels to use
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557029
Zenodo 2020-04-23
2018 Leskosek, Brane; Matalonga, Leslie; Kastrin, Andrej; Dimec, Jure; Femke Francissen; Beltran, Sergi; Coward, Eivind; Peterson, Hedi; Gut, Ivo; Roos, Marco; Varma, Susheel
Report on the ELIXIR workshop organized with the rare-disease communities
published pages: , ISSN: , DOI: 10.5281/zenodo.1321601
2020-04-23
2017 Mona Alshahrani, Mohammad Asif Khan, Omar Maddouri, Akira R Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf
Neuro-symbolic representation learning on biological knowledge graphs
published pages: 2723-2730, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx275
Bioinformatics 33/17 2020-04-23
2017 Petra ten Hoopen, Robert D. Finn, Lars Ailo Bongo, Erwan Corre, Bruno Fosso, Folker Meyer, Alex Mitchell, Eric Pelletier, Graziano Pesole, Monica Santamaria, Nils Peder Willassen, Guy Cochrane
The metagenomic data life-cycle: standards and best practices
published pages: 1-11, ISSN: 2047-217X, DOI: 10.1093/gigascience/gix047
GigaScience 6/8 2020-04-23
2017 Premysl Velek; Andrew Smith
Release of a live ELIXIR Communication Strategy
published pages: , ISSN: , DOI: 10.5281/zenodo.557084
2020-04-23
2018 António Marcos Ramos, Ana Usié, Pedro Barbosa, Pedro M. Barros, Tiago Capote, Inês Chaves, Fernanda Simões, Isabl Abreu, Isabel Carrasquinho, Carlos Faro, Joana B. Guimarães, Diogo Mendonça, Filomena Nóbrega, Leandra Rodrigues, Nelson J. M. Saibo, Maria Carolina Varela, Conceição Egas, José Matos, Célia M. Miguel, M. Margarida Oliveira, Cândido P. Ricardo, Sónia Gonçalves
The draft genome sequence of cork oak
published pages: 180069, ISSN: 2052-4463, DOI: 10.1038/sdata.2018.69
Scientific Data 5 2020-04-23
2017 Javier Lopez, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquin Tarraga, Pedro Furio-Tari, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan Gräf, Augusto Rendon, Joaquin Dopazo, Ignacio Medina
HGVA: the Human Genome Variation Archive
published pages: W189-W194, ISSN: 0305-1048, DOI: 10.1093/nar/gkx445
Nucleic Acids Research 45/W1 2020-04-23
2016 D. Tabas-Madrid, J. Segura, R. Sanchez-Garcia, J. Cuenca-Alba, C.O.S. Sorzano, J.M. Carazo
3DBIONOTES: A unified, enriched and interactive view of macromolecular information
published pages: 231-234, ISSN: 1047-8477, DOI: 10.1016/j.jsb.2016.02.007
Journal of Structural Biology 194/2 2020-04-23
2017 Alba Gutiérrez-Sacristán, Carles Hernández-Ferrer, Juan R González, Laura I Furlong
psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes
published pages: 4004-4006, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx506
Bioinformatics 33/24 2020-04-23
2017 Carlos Horro, Martin Cook, Teresa K Attwood, Michelle D Brazas, John M Hancock, Patricia Palagi, Manuel Corpas, Rafael Jimenez
BioCIDER: a Contextualisation InDEx for biological Resources discovery
published pages: 2607-2608, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx213
Bioinformatics 33/16 2020-04-23
2018 Alexia Giannoula, Alba Gutierrez-Sacristán, Álex Bravo, Ferran Sanz, Laura I. Furlong
Identifying temporal patterns in patient disease trajectories using dynamic time warping: A population-based study
published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-22578-1
Scientific Reports 8/1 2020-04-23
2017 Víctor López-Ferrando, Andrea Gazzo, Xavier de la Cruz, Modesto Orozco, Josep Ll Gelpí
PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update
published pages: W222-W228, ISSN: 0305-1048, DOI: 10.1093/nar/gkx313
Nucleic Acids Research 45/W1 2020-04-23
2017 Segura, Joan; Sanchez-Garcia, Ruben; Martinez, Marta; Cuenca-Alba, Jesus; Tabas-Madrid, Daniel; Sorzano, C.O.S; Carazo, JM
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures
published pages: , ISSN: 1460-2059, DOI: 10.5281/zenodo.1038019
Bioinformatics 2020-04-23
2017 Adam-Blondon, Anne-Françoise; Chaves, Inês; Coppens, Frederik; Finkers, Richard; Horro, Carlos; Kersey, Paul; Michotey, Celia; Miguel, Célia; Papoutsoglu, Evangelia; Pommier, Cyril; Ramsak, Ziva
ELIXIR EXCELERATE Deliverable D7.1
published pages: , ISSN: , DOI: 10.5281/zenodo.1111825
2020-04-23
2016 ELIXIR Compute platform
Strategy for the adoption and use of an AAI within ELIXIR
published pages: , ISSN: , DOI: 10.5281/zenodo.148302
2020-04-23
2016 Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
A crowdsourcing workflow for extracting chemical-induced disease relations from free text
published pages: baw051, ISSN: 1758-0463, DOI: 10.1093/database/baw051
Database 2016 2020-04-23
2017 Chao Zhang, Jochem Bijlard, Christine Staiger, Serena Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino Da Silva Santos, Jeroen Belien, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond Fijnema
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data
published pages: 1488, ISSN: 2046-1402, DOI: 10.12688/f1000research.12168.1
F1000Research 6 2020-04-23
2017 Héctor Climente-González, Eduard Porta-Pardo, Adam Godzik, Eduardo Eyras
The Functional Impact of Alternative Splicing in Cancer
published pages: 2215-2226, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2017.08.012
Cell Reports 20/9 2020-04-23
2016 Youri Hoogstrate, Chao Zhang, Alexander Senf, Jochem Bijlard, Saskia Hiltemann, David van Enckevort, Susanna Repo, Jaap Heringa, Guido Jenster, Remond J.A. Fijneman, Jan-Willem Boiten, Gerrit A. Meijer, Andrew Stubbs, Jordi Rambla, Dylan Spalding, Sanne Abeln
Integration of EGA secure data access into Galaxy
published pages: 2841, ISSN: 2046-1402, DOI: 10.12688/f1000research.10221.1
F1000Research 5 2020-04-23
2016 Celia van Gelder; Sarah Morgan; Allegra Via; Rita Hendricusdottir; Eija Korpelainen; Chris Ponting; Terri Attwood; Patricia Palagi
Report on the training needs identified across the ELIXIR community
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61411
Zenodo 2020-04-23
2016 M. Gonzalez; S. Suhr
Data Quality Assurance Governance
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61417
Zenodo 2020-04-23
2016 Ivo Gut; Marco Roos; et al.
ELIXIR workshops organized with the Rare Disease community
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557065
Zenodo 2020-04-23
2017 Inge Alexander Raknes; Guy Cochrane; Lars Ailo Bongo; Nils Peder Willassen; Rob Finn; Juan Fu; Sudhagar Veerabadran Balasundaram; Espen Robertsen; Terje Klementsen; Giacomo Tartari
Specific marine databases
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557021
Zenodo 2020-04-23
2017 Doppelt-Azeroual, O., Mareuil F., Deveaud, E.; Kalaš, M., Soranzo, N.; van den Beek, M., Grüning, B., Ison, J. and Ménager, H.
ReGaTE, Registration of Galaxy Tools in Elixir
published pages: , ISSN: 2047-217X, DOI: 10.1093/gigascience/gix022
GigaScience 2020-04-23
2016 Núria Queralt-Rosinach, Janet Piñero, Àlex Bravo, Ferran Sanz, Laura I. Furlong
DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases
published pages: 2236-2238, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btw214
Bioinformatics 32/14 2020-04-23
2017 Espen Mikal Robertsen, Hubert Denise, Alex Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen
ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services
published pages: , ISSN: 2046-1402, DOI: 10.12688/f1000research.10443.1
F1000Research 2020-04-23
2017 Joaquin Dopazo, Cesim Erten
Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes
published pages: , ISSN: 1752-0509, DOI: 10.1186/s12918-017-0495-0
BMC Systems Biology 11/1 2020-04-23
2018 Victoria Dominguez Del Angel, Erik Hjerde, Lieven Sterck, Salvadors Capella-Gutierrez, Cederic Notredame, Olga Vinnere Pettersson, Joelle Amselem, Laurent Bouri, Stephanie Bocs, Christophe Klopp, Jean-Francois Gibrat, Anna Vlasova, Brane L. Leskosek, Lucile Soler, Mahesh Binzer-Panchal, Henrik Lantz
Ten steps to get started in Genome Assembly and Annotation
published pages: 148, ISSN: 2046-1402, DOI: 10.12688/f1000research.13598.1
F1000Research 7 2020-04-23
2018 Ison, Jon; Brunak, Søren; Tools platform community
REPORT: Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis
published pages: , ISSN: , DOI: 10.5281/zenodo.1321740
2020-04-23
2017 Salvador Capella-Gutierrez; Diana de la Iglesia; Jürgen Haas; Josep Lluís Gelpi; José María Fernández
Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557010
Zenodo 2020-04-23
2017 Adam Hospital, Michela Candotti, Josep Lluís Gelpí, Modesto Orozco
The Multiple Roles of Waters in Protein Solvation
published pages: 3636-3643, ISSN: 1520-6106, DOI: 10.1021/acs.jpcb.6b09676
The Journal of Physical Chemistry B 121/15 2020-04-23
2015 Niklas Blomberg, Arlindo Oliveira, Barend Mons, Bengt Persson, Inge Jonassen
The ELIXIR channel in F1000Research
published pages: , ISSN: 2046-1402, DOI: 10.12688/f1000research.7587.1
F1000Research 2020-04-23
2018 Matteo Chiara, Antonio Placido, Ernesto Picardi, Luigi Ruggiero Ceci, David Stephen Horner, Graziano Pesole
A-GAME: improving the assembly of pooled functional metagenomics sequence data
published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-017-4369-z
BMC Genomics 19/1 2020-04-23
2017 Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
published pages: 1040, ISSN: 2046-1402, DOI: 10.12688/f1000research.11718.1
F1000Research 6 2020-04-23
2017 Michiel Van Bel, Tim Diels, Emmelien Vancaester, Lukasz Kreft, Alexander Botzki, Yves Van de Peer, Frederik Coppens, Klaas Vandepoele
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
published pages: D1190-D1196, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1002
Nucleic Acids Research 46/D1 2020-04-23
2017 Susanna-Assunta Sansone, Alejandra Gonzalez-Beltran, Philippe Rocca-Serra, George Alter, Jeffrey S. Grethe, Hua Xu, Ian M. Fore, Jared Lyle, Anupama E. Gururaj, Xiaoling Chen, Hyeon-eui Kim, Nansu Zong, Yueling Li, Ruiling Liu, I. Burak Ozyurt, Lucila Ohno-Machado
DATS, the data tag suite to enable discoverability of datasets
published pages: 170059, ISSN: 2052-4463, DOI: 10.1038/sdata.2017.59
Scientific Data 4 2020-04-23
2018 Carole Goble, Stian Soiland-Reyes, Sean Bechhofe
Research Object Community Update
published pages: , ISSN: , DOI: 10.5281/zenodo.1313066
2020-04-23
2017 Pérez-Pérez, Martin; Rabal, Obdulia; Pérez-Rodríguez, Gael; Vazquez, Miguel; Fdez-Riverola, Florentino; Oyarzabal, Julen; Valencia, Alfonso; Lourenço, Anália; Krallinger, Martin
Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks
published pages: , ISSN: , DOI:
2020-04-23
2017 B. Fosso M. Santamaria M. D’Antonio D. Lovero G. Corrado E. Vizza N. Passaro A.R. Garbuglia M.R. Capobianchi M. Crescenzi G. Valiente G. Pesole
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data
published pages: , ISSN: 1460-2059, DOI: 10.1093/bioinformatics/btx036
Bioinformatics 2020-04-23
2018 elek, Premysl; Wiles, Kayla; Smith, Andrew; Garcia Roman, Pablo; Cook, Martin; Cernoskova, Dana
Deliverable 13.2: Report on ELIXIR\'s Communication Strategy
published pages: , ISSN: , DOI: 10.5281/zenodo.1321214
2020-04-23
2017 Maria Levchenko, Yuci Gou, Florian Graef, Audrey Hamelers, Zhan Huang, Michele Ide-Smith, Anusha Iyer, Oliver Kilian, Jyothi Katuri, Jee-Hyub Kim, Nikos Marinos, Rakesh Nambiar, Michael Parkin, Xingjun Pi, Frances Rogers, Francesco Talo, Vid Vartak, Aravind Venkatesan, Johanna McEntyre
Europe PMC in 2017
published pages: D1254-D1260, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1005
Nucleic Acids Research 46/D1 2020-04-23
2018 Nyrönen, Tommi; Matyska, Ludek; Newhouse, Steven; Compute platform community
REPORT: Updated ELIXIR Technical Services Roadmap
published pages: , ISSN: , DOI: 10.5281/zenodo.1321699
2020-04-23
2017 Alex L Mitchell, Maxim Scheremetjew, Hubert Denise, Simon Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A Salazar, Sebastien Pesseat, Miguel A Boland, Fiona M I Hunter, Petra ten Hoopen, Blaise Alako, Clara Amid, Darren J Wilkinson, Thomas P Curtis, Guy Cochrane, Robert D Finn
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
published pages: D726-D735, ISSN: 0305-1048, DOI: 10.1093/nar/gkx967
Nucleic Acids Research 46/D1 2020-04-23
2016 Johanna McEntyre; Christine Durinx; ELIXIR Partners
List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource” and “ELIXIR Core Resource” labels, to allow construction and extension of the ELIXIR Resource portfolio
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.60706
Zenodo 2020-04-23
2018 Pedro G. Ferreira, Manuel Muñoz-Aguirre, Ferran Reverter, Caio P. Sá Godinho, Abel Sousa, Alicia Amadoz, Reza Sodaei, Marta R. Hidalgo, Dmitri Pervouchine, Jose Carbonell-Caballero, Ramil Nurtdinov, Alessandra Breschi, Raziel Amador, Patrícia Oliveira, Cankut Çubuk, João Curado, François Aguet, Carla Oliveira, Joaquin Dopazo, Michael Sammeth, Kristin G. Ardlie, Roderic Guigó
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-017-02772-x
Nature Communications 9/1 2020-04-23
2016 Henrik Lantz; Bengt Persson
ELIXIR Advanced workshops on genome annotation
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557060
Zenodo 2020-04-23
2018 Hermjakob, Henning; Mcmurry, Julie; Beard, Niall; Clark, Tim; Janée, Greg; Jimenez, Rafael; Grethe, Jeffrey; Wimalaratne, Sarala; Kunze, John; Juty, Nick
Uniform Resolution of Compact Identifiers for Biomedical Data
published pages: , ISSN: , DOI: 10.1101/101279
1 2020-04-23
2016 Jaroslav Bendl, Jan Stourac, Eva Sebestova, Ondrej Vavra, Milos Musil, Jan Brezovsky, Jiri Damborsky
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering
published pages: W479-W487, ISSN: 0305-1048, DOI: 10.1093/nar/gkw416
Nucleic Acids Research 44/W1 2020-04-23
2017 Terje Klemetsen, Inge A Raknes, Juan Fu, Alexander Agafonov, Sudhagar V Balasundaram, Giacomo Tartari, Espen Robertsen, Nils P Willassen
The MAR databases: development and implementation of databases specific for marine metagenomics
published pages: D692-D699, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1036
Nucleic Acids Research 46/D1 2020-04-23
2018 Niklas Blomberg; Martin Cook; Pablo Roman Garcia; Stephanie Suhr; Premysl Velek; Montserrat Gonzalez; Susanna Repo
ELIXIR Handbook of Operations
published pages: , ISSN: , DOI: 10.5281/zenodo.1289765
2020-04-23
2016 Christine Durinx, Jo McEntyre, Ron Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Chuck Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Alfonso Valencia
Identifying ELIXIR Core Data Resources
published pages: 2422, ISSN: 2046-1402, DOI: 10.12688/f1000research.9656.1
F1000Research 5 2020-04-23
2016 Lars Ailo Bongo; Mikael Borg; Amelie Cornelis; Montserrat Gonzalez; Luis Gracia; Rob Hooft; Jarno Laitinen; Ilkka Lappalainen; Mikael Linden; Ludek Matyska; Steven Newhouse; Tommi Nyrönen; Michal Prochazka; Mirek Ruda; Harri Salminen; Christine Staiger; Tony Wildish
A Technical Services Roadmap for supporting Life Science Research in Europe
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.60291
Zenodo 2020-04-23
2016 Janet Piñero, Ariel Berenstein, Abel Gonzalez-Perez, Ariel Chernomoretz, Laura I. Furlong
Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing
published pages: 24570, ISSN: 2045-2322, DOI: 10.1038/srep24570
Scientific Reports 6 2020-04-23
2016 Chacón, Alejandro; Camps, Jordi; Espinosa, Antonio; Gut, Marta; Laurie, Steve; Marco‐Sola, Santiago; Heath, Simon; Trotta, Jean‐Remi; Beltran, Sergi; Gut, Ivo; Fernandez‐Callejo, Marcos
From Wet‐Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing
published pages: , ISSN: 1098-1004, DOI: 10.1002/humu.23114
Human Mutation 2 2020-04-23
2017 Ana Luisa Toribio, Blaise Alako, Clara Amid, Ana Cerdeño-Tarrága, Laura Clarke, Iain Cleland, Susan Fairley, Richard Gibson, Neil Goodgame, Petra ten Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Marc Rosello, Nicole Silvester, Dmitriy Smirnov, Daniel Vaughan, Vadim Zalunin, Guy Cochrane
European Nucleotide Archive in 2016
published pages: D32-D36, ISSN: 0305-1048, DOI: 10.1093/nar/gkw1106
Nucleic Acids Research 45/D1 2020-04-23
2017 L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone, M. Thurston, M.R. Viant, C.L. Winder, C.A. Goble, C.P. Ponting, G. Rustici
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
published pages: 952, ISSN: 2046-1402, DOI: 10.12688/f1000research.11837.1
F1000Research 6 2020-04-23
2017 Buchhalter, Ivo; Whalley, Justin; Hutter, Barbara; Livitz, Dimitri; Perry, Marc; Rosenberg, Mara; Saksena, Gordon; Trotta, Jean-Rémi; Raine, Keiran; Eils, Roland; Korbel, Jan; Rheinbay, Esther; Network, Pcawg; , Pcawg-Qc; Kleinheinz, Kortine; Gerhard, Daniela; Campbell, Peter; Getz, Gad; Schlesner, Matthias; Werner, Johannes; Beltran, Sergi; Gut, Marta; Huebschmann, Daniel; Gut, Ivo; Stobbe, Mira
Framework For Quality Assessment Of Whole Genome, Cancer Sequences
published pages: , ISSN: , DOI: 10.1101/140921
2020-04-23
2017 José Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R Hidalgo, Cankut Çubuk, David Conesa, Antonio López-Quílez, Joaquín Dopazo
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise
published pages: 3511-3517, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx482
Bioinformatics 33/22 2020-04-23
2017 Kuzmanic, A.; Sutto, L.; Saladino, G.; Nebreda, A. R.; Gervasio, F. L.; Orozco, M.
Changes in the free-energy landscape of p38α MAP kinase through its canonical activation and binding events as studied by enhanced molecular dynamics simulations
published pages: , ISSN: 2050-084X, DOI: 10.7554/eLife.22175.001
eLife , 6 , Article e22175. (2017) 2 2020-04-23
2017 Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training
published pages: 1557, ISSN: 2046-1402, DOI: 10.12688/f1000research.12332.1
F1000Research 6 2020-04-23
2017 Roni Rasnic, Nathan Linial, Michal Linial
Enhancing identification of cancer types via lowly-expressed microRNAs
published pages: 5048-5060, ISSN: 0305-1048, DOI: 10.1093/nar/gkx210
Nucleic Acids Research 45/9 2020-04-23
2017 José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe J. Chaves, Pablo Marín-Garcia, Ignacio Medina, Vicente Arnau, Joaquín Dopazo
VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy
published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-017-1837-z
BMC Bioinformatics 18/1 2020-04-23
2016 Stephanie Suhr; Niklas Blomberg
ELIXIR Ethics Policy
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557027
Zenodo 2020-04-23
2017 Nicole Silvester, Blaise Alako, Clara Amid, Ana Cerdeño-Tarrága, Laura Clarke, Iain Cleland, Peter W Harrison, Suran Jayathilaka, Simon Kay, Thomas Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Manuela Menchi, Kethi Reddy, Nima Pakseresht, Jeena Rajan, Marc Rossello, Dmitriy Smirnov, Ana L Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane
The European Nucleotide Archive in 2017
published pages: D36-D40, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1125
Nucleic Acids Research 46/D1 2020-04-23
2018 Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz
Tackling the challenges of matching biomedical ontologies
published pages: , ISSN: 2041-1480, DOI: 10.1186/s13326-017-0170-9
Journal of Biomedical Semantics 9/1 2020-04-23
2016 Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text
published pages: baw094, ISSN: 1758-0463, DOI: 10.1093/database/baw094
Database 2016 2020-04-23
2016 All EXCELERATE-funded partners, and many other non- ELIXIR organisations (see https://bio.tools/governance) have contributed to this work
Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61416
Zenodo 2020-04-23
2018 Sarala M. Wimalaratne, Nick Juty, John Kunze, Greg Janée, Julie A. McMurry, Niall Beard, Rafael Jimenez, Jeffrey S. Grethe, Henning Hermjakob, Maryann E. Martone, Tim Clark
Uniform resolution of compact identifiers for biomedical data
published pages: 180029, ISSN: 2052-4463, DOI: 10.1038/sdata.2018.29
Scientific Data 5 2020-04-23
2016 Palagi, Patricia M.; van Gelder, Celia W. G.; Attwood, Teresa K; Leskosek, Brane L.; Morgan, Sarah; Dimec, Jure; Mulder, Nicola
Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem
published pages: , ISSN: , DOI: 10.5281/zenodo.166378
1 2020-04-23
2017 Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael Crusoe, Hedi Peterson, Jon Ison, Hervé Ménager
Using bio.tools to generate and annotate workbench tool descriptions
published pages: 2074, ISSN: 2046-1402, DOI: 10.12688/f1000research.12974.1
F1000Research 6 2020-04-23
2017 Annemarie H. Eckes, Tomasz Gubała, Piotr Nowakowski, Tomasz Szymczyszyn, Rachel Wells, Judith A. Irwin, Carlos Horro, John M. Hancock, Graham King, Sarah C. Dyer, Wiktor Jurkowski
Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
published pages: 465, ISSN: 2046-1402, DOI: 10.12688/f1000research.11301.1
F1000Research 6 2020-04-23
2018 Guy Cochrane; Rob Finn; Nils Peder Willassen; Lars Ailo Bongo; Monica Santamaria; Bruno Fosso; Eric Pelletier; Erwan Corre; Alex Mitchell; Simon Potter
ELIXIR-EXCELERATE: Deliverable 6.2: Report on comprehensive metagenomic data standards environment
published pages: , ISSN: , DOI: 10.5281/zenodo.1229221
2020-04-23
2016 Adam Hospital, Pau Andrio, Cesare Cugnasco, Laia Codo, Yolanda Becerra, Pablo D. Dans, Federica Battistini, Jordi Torres, Ramón Goñi, Modesto Orozco, Josep Ll. Gelpí
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
published pages: D272-D278, ISSN: 0305-1048, DOI: 10.1093/nar/gkv1301
Nucleic Acids Research 44/D1 2020-04-23
2017 Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas
BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets
published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-017-1812-8
BMC Bioinformatics 18/1 2020-04-23
2017 Hidalgo, Marta; Dopazo, Joaquín; Vert, Jean-Philippe; Carbonell-Caballero, Jose; Amadoz, Alicia; Cubuk, Cankut; Jiao, Yunlong
Signaling Pathway Activities Improve Prognosis for Breast Cancer
published pages: , ISSN: , DOI: 10.1101/132357
2020-04-23
2012 Aravind Venkatesan, Jee-Hyub Kim, Francesco Talo, Michele Ide-Smith, Julien Gobeill, Jacob Carter, Riza Batista-Navarro, Sophia Ananiadou, Patrick Ruch, Johanna McEntyre
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data
published pages: 25, ISSN: 2398-502X, DOI: 10.12688/wellcomeopenres.10210.1
Wellcome Open Research 1 2020-04-23
2016 Matias M. Falco, Marta Bleda, José Carbonell-Caballero, Joaquín Dopazo
The pan-cancer pathological regulatory landscape
published pages: , ISSN: 2045-2322, DOI: 10.1038/srep39709
Scientific Reports 6/1 2020-04-23
2017 Lukáš Pravda, David Sehnal, Radka Svobodová Vařeková, Veronika Navrátilová, Dominik Toušek, Karel Berka, Michal Otyepka, Jaroslav Koča
ChannelsDB: database of biomacromolecular tunnels and pores
published pages: D399-D405, ISSN: 0305-1048, DOI: 10.1093/nar/gkx868
Nucleic Acids Research 46/D1 2020-04-23
2017 Amadís Pagès, Ivan Dotu, Joan Pallarès-Albanell, Eulàlia Martí, Roderic Guigó, Eduardo Eyras
The discovery potential of RNA processing profiles
published pages: e15-e15, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1115
Nucleic Acids Research 46/3 2020-04-23
2017 Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, Björn Grüning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, D
Four simple recommendations to encourage best practices in research software
published pages: 876, ISSN: 2046-1402, DOI: 10.12688/f1000research.11407.1
F1000Research 6 2020-04-23
2017 Marta R. Hidalgo, Cankut Cubuk, Alicia Amadoz, Francisco Salavert, José Carbonell-Caballero, Joaquin Dopazo
High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes
published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.14107
Oncotarget 8/3 2020-04-23
2016 Jon Ison, Kristoffer Rapacki, Hervé Ménager, Matúš Kalaš, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gat
Tools and data services registry: a community effort to document bioinformatics resources
published pages: D38-D47, ISSN: 0305-1048, DOI: 10.1093/nar/gkv1116
Nucleic Acids Research 44/D1 2020-04-23
2017 Alba Gutiérrez-Sacristán, Àlex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M.C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, M.A. Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Jesús Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warn
Text mining and expert curation to develop a database on psychiatric diseases and their genes
published pages: , ISSN: 1758-0463, DOI: 10.1093/database/bax043
Database 2017/1 2020-04-23
2016 Mark D. Wilkinson, Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, Mercè Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J.G. Gray, Paul Groth, Carole Gobl
The FAIR Guiding Principles for scientific data management and stewardship
published pages: , ISSN: 2052-4463, DOI: 10.1038/sdata.2016.18
Sci Data 2020-04-23
2018 Adam-Blondon, Anne-Françoise; Chaves, Inês; Coppens, Friederik; Costa, Bruno; Finkers, Richard; Horro, Carlos; Kersey, Paul; Mihotey, Celia; Miguel, Celia; Papoutsoglu, Evangelia; Pommier, Cyril; Ramsak, Ziva
Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample metadata submitted to appropriate public archives
published pages: , ISSN: , DOI: 10.5281/zenodo.1321902
2020-04-23
2016 Jiří Damborský; Jaroslav Zendulka; Miloš Musil; Jan Štourač; Jaroslav Bendl; Jan Brezovský
PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
published pages: , ISSN: 1553-734X, DOI: 10.1371/journal.pcbi.1004962
PLoS Computational Biology 1 2020-04-23
2016 Dylan Spalding; Helen Parkinson; Jordi Rambla; Niclas Jareborg; Abdulrahman Azab; Ilkka Lappalainen; Jeff Almaida-King; Alexander Senf; Saif Ur-Rehman
Requirements analysis document
published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61414
Zenodo 2020-04-23
2016 D. Digles, B. Zdrazil, J.-M. Neefs, H. Van Vlijmen, C. Herhaus, A. Caracoti, J. Brea, B. Roibás, M. I. Loza, N. Queralt-Rosinach, L. I. Furlong, A. Gaulton, L. Bartek, S. Senger, C. Chichester, O. Engkvist, C. T. Evelo, N. I. Franklin, D. Marren, G. F. Ecker, E. Jacoby
Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns
published pages: 1237-1244, ISSN: 2040-2503, DOI: 10.1039/C6MD00065G
Med. Chem. Commun. 7/6 2020-04-23
2017 Janet Piñero, Àlex Bravo, Núria Queralt-Rosinach, Alba Gutiérrez-Sacristán, Jordi Deu-Pons, Emilio Centeno, Javier García-García, Ferran Sanz, Laura I. Furlong
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
published pages: D833-D839, ISSN: 0305-1048, DOI: 10.1093/nar/gkw943
Nucleic Acids Research 45/D1 2020-04-23
2018 Sergio Diaz-del-Pino, Oswaldo Trelles, Juan Falgueras
mORCA: ubiquitous access to life science web services
published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-018-4439-x
BMC Genomics 19/1 2020-04-23
2018 Stockinger, Heinz; Barlow, Mary; Cook, Chuck; Drysdale, Rachel; Gasteiger, Elisabeth; Kim, Jee-Hyub; Lopez, Rodrigo; Redaschi, Nicole; Teixeira, Daniel; Durinx, Christine; McEntyre, Johanna
Plan for collation of metrics and quality data at the ELIXIR Hub
published pages: , ISSN: , DOI: 10.5281/zenodo.1194123
2020-04-23
2016 Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob Hooft, Rafael C. Jimenez, Brane Leskošek, Brett G. Olivier, Jan Stourac, Radka Svobodová Vařeková, Thomas Van Parys, Daniel Vaughan
Top 10 metrics for life science software good practices
published pages: 2000, ISSN: 2046-1402, DOI: 10.12688/f1000research.9206.1
F1000Research 5 2020-04-23
2017 Juan Antonio Vizcaíno, Mathias Walzer, Rafael C. Jiménez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J.R. Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek,
A community proposal to integrate proteomics activities in ELIXIR
published pages: 875, ISSN: 2046-1402, DOI: 10.12688/f1000research.11751.1
F1000Research 6 2020-04-23
2017 Antonija Kuzmanic, Ludovico Sutto, Giorgio Saladino, Angel R Nebreda, Francesco L Gervasio, Modesto Orozco
Changes in the free-energy landscape of p38α MAP kinase through its canonical activation and binding events as studied by enhanced molecular dynamics simulations
published pages: , ISSN: 2050-084X, DOI: 10.7554/eLife.22175
eLife 6 2020-04-23
2017 Segura, Joan; Sanchez-Garcia, Ruben; Martinez, Marta; Cuenca-Alba, Jesus; Tabas-Madrid, Daniel; Sorzano, C.O.S; Carazo, JM
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures
published pages: , ISSN: , DOI: 10.5281/zenodo.1038018
2020-04-23
2018 Alexandre Almeida, Alex L Mitchell, Aleksandra Tarkowska, Robert D Finn
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
published pages: , ISSN: 2047-217X, DOI: 10.1093/gigascience/giy054
GigaScience 7/5 2020-04-23
2018 Inge Alexander Raknes, Lars Ailo Bongo
META-pipe Authorization service
published pages: 32, ISSN: 2046-1402, DOI: 10.12688/f1000research.13256.2
F1000Research 7 2020-04-23
2017 Carole Goble; Rafael Jimenez; Alasdair Gray; Niall Beard; Giuseppe Profiti; Norman Morrison
Bioschemas.org
published pages: , ISSN: , DOI: 10.7490/f1000research.1114493.1
2020-04-23
2018 Lukáš Pravda, David Sehnal, Dominik Toušek, Veronika Navrátilová, Václav Bazgier, Karel Berka, Radka Svobodová Vařeková, Jaroslav Koča, Michal Otyepka
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)
published pages: W368-W373, ISSN: 0305-1048, DOI: 10.1093/nar/gky309
Nucleic Acids Research 46/W1 2020-04-23
2018 Trotta, Jean-Rémi; Laurie, Steve; Matalonga, Leslie; Gut, Marta; Beltran, Sergi; Gut, Ivo G.
ELIXIR-EXCELERATE D8.6: Documentation on adequate quality reporting standards for genomics datasets
published pages: , ISSN: , DOI: 10.5281/zenodo.3209549
2020-04-23
2019 Carole Goble; Sarah Cohen-Boulakia; Daniel Schober; Kristian Peters; Stian Soiland-Reyes; Daniel Garijo; Yolanda Gil; Michael R. Crusoe
FAIR Computational Workflows
published pages: , ISSN: , DOI: 10.5281/zenodo.2642530
2020-04-23
2019 Hooft, Rob; Goble, Carole; Evelo, Chris; Roos, Marco; Sansone, Susanna; Ehrhart, Friederike; Kuzak, Mateusz; Carta, Claudio; Parkinson, Helen; Jansen, Mascha; Mons, Barend
ELIXIR-EXCELERATE D5.3: Bring Your Own Data (BYOD)
published pages: , ISSN: , DOI: 10.5281/zenodo.3207809
2020-04-23
2017 Sergio Díaz-del-Pino, Juan Falgueras, Esteban Perez-Wohlfeil, Oswaldo Trelles
mORCA: sailing bioinformatics world with mobile devices
published pages: 869-870, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx673
Bioinformatics 34/5 2020-04-23
2019 Finn, Robert; Mitchell, Alex; Cochrane, Guy; Burgin, Josephine; Willassen, Nils Peder
ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples
published pages: , ISSN: , DOI: 10.5281/zenodo.3234520
2020-04-23
2019 Mitchell, Alex; Scheremetjew, Maxim; De Moro, Gianluca; Fosso, Bruno; Santamaria, Monica; Pesole, Graziano; Raj, Shriya; Bongo, Lars Ailo; Willassen, Nils Peder; Finn, Robert D.
ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data.
published pages: , ISSN: , DOI: 10.5281/zenodo.3228302
2020-04-23
2019 Gut, Ivo G.; Beltran, Sergi; Roos, Marco; Blomberg, Niklas; Scollen, Serena; Matalonga, Leslie; Saunders, Gary
ELIXIR-EXCELERATE D8.7: Options for sustainability of RD-Connect within the scope of ELIXIR
published pages: , ISSN: , DOI: 10.5281/zenodo.3228294
2020-04-23
2017 Gaël Manes, Willy Joly, Thomas Guignard, Vasily Smirnov, Sylvie Berthemy, Béatrice Bocquet, Isabelle Audo, Christina Zeitz, José Sahel, Chantal Cazevieille, Audrey Sénéchal, Jean-François Deleuze, Hélène Blanché-Koch, Anne Boland, Patrick Carroll, David Geneviève, Xavier Zanlonghi, Carl Arndt, Christian P Hamel, Sabine Defoort-Dhellemmes, Isabelle Meunier
A novel duplication of PRMD13 causes North Carolina macular dystrophy: overexpression of PRDM13 orthologue in drosophila eye reproduces the human phenotype
published pages: 4367-4374, ISSN: 0964-6906, DOI: 10.1093/hmg/ddx322
Human Molecular Genetics 26/22 2020-04-23
2019 Pelletier, Eric; Corre, Erwan; Niang, Guita; Meng, Arnaud; Hoebeke, Mark; Finn, Robert
ELIXIR-EXCELERATE D6.5: Improvement and Application of Eukaryotic Gene catalogue
published pages: , ISSN: , DOI: 10.5281/zenodo.3234522
2020-04-23
2019 Leskosek, Brane; Matalonga, Leslie; Beltran, Sergi; Roos, Marco
ELIXIR-EXCELERATE D8.5: Report on the ELIXIR workshops organized with the Rare Diseases communities
published pages: , ISSN: , DOI: 10.5281/zenodo.3234533
2020-04-23
2018 McEntyre, Jo; Venkatesan, Aravind; Gobeill Julien; Piovesan, Damiano; Tosatto, Silvio; Ruch, Patrick
3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations
published pages: , ISSN: , DOI: 10.5281/zenodo.1452442
2020-04-23
2018 Jacobsen, Annika; Thompson, Mark; Hanauer, Marc; Sergi, Beltran; Gray, Alasdair; Juty, Nick; Ehrhart, Friederike; Evelo, Chris
D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease field
published pages: , ISSN: , DOI: 10.5281/zenodo.1452468
2020-04-23
2018 Newhouse, Steven; Nyrönen, Tommi; Matyska, Ludek; ELIXIR Compute platform community
D4.3 The ELIXIR Compute Platform: A Technical Services Roadmap for supporting Life Science Research in Europe
published pages: , ISSN: , DOI: 10.5281/zenodo.1457169
2020-04-23
2018 Gelpi Ll., Josep; Mª. Fernández, Jose; Sundesha, Vicky; Repchevsky; Haas, Juergen
D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases
published pages: , ISSN: , DOI: 10.5281/zenodo.1452561
2020-04-23
2018 Capella-Gutierrez, Salvador; Haas, Juergen; Ll. Gelpí, Josep; Mª. Fernández, Jose; Garrayo, Javier
D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas
published pages: , ISSN: , DOI: 10.5281/zenodo.1452425
2020-04-23
2018 Rustici, Gabriella; Gurwitz, Kim; Louisa, Bellis; ELIXIR Training community
11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions
published pages: , ISSN: , DOI: 10.5281/zenodo.1453021
2020-04-23
2018 Joaquim Aguirre-Plans, Janet Piñero, Jörg Menche, Ferran Sanz, Laura Furlong, Harald Schmidt, Baldo Oliva, Emre Guney
Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology
published pages: 61, ISSN: 1424-8247, DOI: 10.3390/ph11030061
Pharmaceuticals 11/3 2020-04-23
2018 Miguel, Célia; Pommier, Cyril; Finkers, Richard; Coppens, Frederik; Bolser, Dan
D7.2 Phenotypic data exposed through integrating API by all participants
published pages: , ISSN: , DOI: 10.5281/zenodo.1452452
2020-04-23
2018 Goble, Carol; Evelo, Chris; Parkinson, Helen; ELIXIR Interoperability community
D5.1 Interoperability Implementation Regulations.
published pages: , ISSN: , DOI: 10.5281/zenodo.1452415
2020-04-23
2018 de la Torre, Sabela; Moldes, Mauricio; Rambla, Jordi
D9.2 Report on implementation of submissions interface and API
published pages: , ISSN: , DOI: 10.5281/zenodo.1452480
2020-04-23
2018 Spalding, Dylan; Rambla, Jordi; Törnroos, Juha; Leinonen, Jaakko; Linden, Mikael; Human data community
D9.5 Report on implementation of ELSI and policy consideration for controlled access data
published pages: , ISSN: , DOI: 10.5281/zenodo.1452470
2020-04-23
2018 de la Torre, Sabela; Lloret-Villas, Audald; Rambla, Jordi
D9.3 Report on implementation of value-added user applications and cohort integration
published pages: , ISSN: , DOI: 10.5281/zenodo.1452472
2020-04-23

Are you the coordinator (or a participant) of this project? Plaese send me more information about the "ELIXIR-EXCELERATE" project.

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Send me an  email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.

Thanks. And then put a link of this page into your project's website.

The information about "ELIXIR-EXCELERATE" are provided by the European Opendata Portal: CORDIS opendata.

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