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MEDGENET

Medical Genomics and Epigenomics Network

Total Cost €

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EC-Contrib. €

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Partnership

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Project "MEDGENET" data sheet

The following table provides information about the project.

Coordinator
Masarykova univerzita 

Organization address
address: Zerotinovo namesti 9
city: BRNO STRED
postcode: 60177
website: http://www.muni.cz

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Czech Republic [CZ]
 Project website http://www.medgenet.eu
 Total cost 1˙016˙531 €
 EC max contribution 974˙529 € (96%)
 Programme 1. H2020-EU.4.b. (Twinning of research institutions)
 Code Call H2020-TWINN-2015
 Funding Scheme CSA
 Starting year 2016
 Duration (year-month-day) from 2016-01-01   to  2018-12-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    Masarykova univerzita CZ (BRNO STRED) coordinator 639˙243.00
2    EUROPEAN MOLECULAR BIOLOGY LABORATORY DE (HEIDELBERG) participant 118˙835.00
3    ETHNIKO KENTRO EREVNAS KAI TECHNOLOGIKIS ANAPTYXIS EL (THERMI THESSALONIKI) participant 109˙075.00
4    UPPSALA UNIVERSITET SE (UPPSALA) participant 107˙375.00

Map

 Project objective

The main goal of MEDGENET consortium is to use synergies and existing expertise in EU leading institutions such as EMBL, Uppsala University and CERTH to reinforce the productivity and competitiveness of the CEITEC in the field of medical genomics and epigenomics. We propose clear strategy based on combination of unique complementary skills present in partner institutions that will transform CEITEC into a key leader in the field. ERA Chair who recently joint CEITEC already initiated the transformational change of the institute and TWINNING framework will further support sharing her international contacts with other CEITEC researchers. MEDGENET aims to create well-educated taskforce of biomedical researchers, who will notably contribute to the development of new genomics and bioinformatics tools and their application in clinical practice. Proposed project will enable to establish the best practices for performing innovative and high-quality biomedical research and to strengthen CEITEC´s competence to translate the research results into high value-added clinical applications. Stimulation of knowledge exchange, implementation of cutting edge technologies and mastery of modern genomics and bioinformatics methodologies will have a direct impact on the overall research and innovation potential of CEITEC and will increase its visibility in the international scientific community.

 Deliverables

List of deliverables.
Report on WP2 coordination, networking and educational events IV. Documents, reports 2020-01-15 12:38:18
Report on outreach activities VI. Documents, reports 2020-01-15 12:38:18
E-Newsletter IV. Documents, reports 2020-01-15 12:38:18
E-Newsletter V. Documents, reports 2020-01-15 12:38:18
Report on WP1 coordination, networking and educational events V. Documents, reports 2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events VI. Documents, reports 2020-01-15 12:38:18
2nd on-line book of abstracts WP2 Documents, reports 2020-01-15 12:38:18
Report on WP2 coordination, networking and educational events III. Documents, reports 2020-01-15 12:38:17
Report on CEITEC scientific excellence and MEDGENET impact assessment Documents, reports 2020-01-15 12:38:18
Report on outreach activities IV. Documents, reports 2020-01-15 12:38:18
Report on outreach activities V. Documents, reports 2020-01-15 12:38:18
1st on-line book of abstracts WP2 Documents, reports 2020-01-15 12:38:18
2nd on-line book of abstracts WP1 Documents, reports 2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events IV. Documents, reports 2020-01-15 12:38:17
Report on WP2 coordination, networking and educational events II. Documents, reports 2020-01-15 12:38:18
E-Newsletter VI. Documents, reports 2020-01-15 12:38:18
3rd on-line bok of abstracts WP1 Documents, reports 2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events II. Documents, reports 2020-01-15 12:38:16
Report after introducing the a tool for monitoring evolution of publishing activity Documents, reports 2020-01-15 12:38:16
MEDGENET web page Websites, patent fillings, videos etc. 2020-01-15 12:38:15
Report on outreach activities I. Documents, reports 2020-01-15 12:38:15
Report on WP1 coordination, networking and educational events III. Documents, reports 2020-01-15 12:38:16
E-Newsletter III. Documents, reports 2020-01-15 12:38:16
E-Newsletter II. Documents, reports 2020-01-15 12:38:16
1st on-line book of abstracts WP1 Documents, reports 2020-01-15 12:38:16
Report on WP2 coordination, networking and educational events I. Documents, reports 2020-01-15 12:38:15
Report on outreach activities III. Documents, reports 2020-01-15 12:38:16
Report on outreach activities II. Documents, reports 2020-01-15 12:38:16
Network’s public engagement and outreach plan Documents, reports 2020-01-15 12:38:15
E-Newsletter I. Documents, reports 2020-01-15 12:38:16
Report on WP1 coordination, networking and educational events I. Documents, reports 2020-01-15 12:38:15
Database of funding opportunities Documents, reports 2020-01-15 12:38:15

Take a look to the deliverables list in detail:  detailed list of MEDGENET deliverables.

 Publications

year authors and title journal last update
List of publications.
2018 Aliki Xochelli, Vasilis Bikos, Eleftheria Polychronidou, Chrysi Galigalidou, Andreas Agathangelidis, Frédéric Charlotte, Panagiotis Moschonas, Zadie Davis, Monica Colombo, Maria Roumelioti, Lesley-Ann Sutton, Patricia Groenen, Michiel van den Brand, Myriam Boudjoghra, Patricia Algara, Alexandra Traverse-Glehen, Ana Ferrer, Evangelia Stalika, Maria Karypidou, George Kanellis, Christina Kalpadakis, Manuella Mollejo, Gerasimos Pangalis, Panayiotis Vlamos, Rose-Marie Amini, Sarka Pospisilova, David Gonzalez, Maurilio Ponzoni, Achilles Anagnostopoulos, Véronique Giudicelli, Marie-Paule Lefranc, Blanca Espinet, Panagiotis Panagiotidis, Miguel Angel Piris, Ming-Qing Du, Richard Rosenquist, Theodora Papadaki, Chrysoula Belessi, Manlio Ferrarini, David Oscier, Dimitrios Tzovaras, Paolo Ghia, Frederic Davi, Anastasia Hadzidimitriou, Kostas Stamatopoulos
Disease-biased and shared characteristics of the immunoglobulin gene repertoires in marginal zone B cell lymphoproliferations
published pages: , ISSN: 0022-3417, DOI: 10.1002/path.5209
The Journal of Pathology 2020-01-15
2017 Ivona Nečasová, Eliška Janoušková, Tomáš Klumpler, Ctirad Hofr
Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it
published pages: 12170-12180, ISSN: 0305-1048, DOI: 10.1093/nar/gkx812
Nucleic Acids Research 45/21 2020-01-15
2018 Nikos Papakonstantinou, Stavroula Ntoufa, Maria Tsagiopoulou, Theodoros Moysiadis, Sujata Bhoi, Andigoni Malousi, Fotis Psomopoulos, Larry Mansouri, Stamatia Laidou, Despoina Papazoglou, Maria Gounari, Konstantinos Pasentsis, Karla Plevova, Venera Kuci-Emruli, Marti Duran-Ferrer, Zadie Davis, Sara Ek, Davide Rossi, Gianluca Gaidano, Matthias Ritgen, David Oscier, Niki Stavroyianni, Sarka Pospisilova, Frederic Davi, Paolo Ghia, Anastasia Hadzidimitriou, Chrysoula Belessi, Jose I Martin-Subero, Christiane Pott, Richard Rosenquist, Kostas Stamatopoulos
Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia
published pages: , ISSN: 0020-7136, DOI: 10.1002/ijc.31999
International Journal of Cancer 2020-01-15
2017 K Brazdilova, K Plevova, H Skuhrova Francova, H Kockova, M Borsky, V Bikos, J Malcikova, A Oltova, J Kotaskova, B Tichy, Y Brychtova, J Mayer, M Doubek, S Pospisilova
Multiple productive IGH rearrangements denote oligoclonality even in immunophenotypically monoclonal CLL
published pages: 234-236, ISSN: 0887-6924, DOI: 10.1038/leu.2017.274
Leukemia 32/1 2020-01-15
2017 R Rosenquist, P Ghia, A Hadzidimitriou, L-A Sutton, A Agathangelidis, P Baliakas, N Darzentas, V Giudicelli, M-P Lefranc, A W Langerak, C Belessi, F Davi, K Stamatopoulos
Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: updated ERIC recommendations
published pages: 1477-1481, ISSN: 0887-6924, DOI: 10.1038/leu.2017.125
Leukemia 31/7 2020-01-15
2016 A Vardi, E Vlachonikola, M Karypidou, E Stalika, V Bikos, K Gemenetzi, C Maramis, A Siorenta, A Anagnostopoulos, S Pospisilova, N Maglaveras, I Chouvarda, K Stamatopoulos, A Hadzidimitriou
Restrictions in the T-cell repertoire of chronic lymphocytic leukemia: high-throughput immunoprofiling supports selection by shared antigenic elements
published pages: 1555-1561, ISSN: 0887-6924, DOI: 10.1038/leu.2016.362
Leukemia 31/7 2020-01-15
2018 Nikola Tom, Ondrej Tom, Jitka Malcikova, Sarka Pavlova, Blanka Kubesova, Tobias Rausch, Miroslav Kolarik, Vladimir Benes, Vojtech Bystry, Sarka Pospisilova
ToTem: a tool for variant calling pipeline optimization
published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-018-2227-x
BMC Bioinformatics 19/1 2020-01-15
2017 Aliki Xochelli, Panagiotis Baliakas, Ioannis Kavakiotis, Andreas Agathangelidis, Lesley-Ann Sutton, Eva Minga, Stavroula Ntoufa, Eugen Tausch, Xiao-Jie Yan, Tait Shanafelt, Karla Plevova, Myriam Boudjogra, Davide Rossi, Zadie Davis, Alba Navarro, Yorick Sandberg, Fie Juhl Vojdeman, Lydia Scarfo, Niki Stavroyianni, Andrey Sudarikov, Silvio Veronese, Tatiana Tzenou, Teodora Karan-Djurasevic, Mark Catherwood, Dirk Kienle, Maria Chatzouli, Monica Facco, Jasmin Bahlo, Christiane Pott, Lone Bredo Pedersen, Larry Mansouri, Karin E. Smedby, Charles C. Chu, Véronique Giudicelli, Marie-Paule Lefranc, Panagiotis Panagiotidis, Gunnar Juliusson, Achilles Anagnostopoulos, Ioannis Vlahavas, Darko Antic, Livio Trentin, Marco Montillo, Carsten Niemann, Hartmut Döhner, Anton W. Langerak, Sarka Pospisilova, Michael Hallek, Elias Campo, Nicholas Chiorazzi, Nikos Maglaveras, David Oscier, Gianluca Gaidano, Diane F. Jelinek, Stephan Stilgenbauer, Ioanna Chouvarda, Nikos Darzentas, Chrysoula Belessi, Frederic Davi, Anastasia Hadzidimitriou, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos
Chronic Lymphocytic Leukemia with Mutated IGHV4-34 Receptors: Shared and Distinct Immunogenetic Features and Clinical Outcomes
published pages: 5292-5301, ISSN: 1078-0432, DOI: 10.1158/1078-0432.ccr-16-3100
Clinical Cancer Research 23/17 2020-01-15
2019 Panagiotis Baliakas, Theodoros Moysiadis, Anastasia Hadzidimitriou, Aliki Xochelli, Sabine Jeromin, Andreas Agathangelidis, Mattias Mattsson, Lesley-Ann Sutton, Eva Minga, Lydia Scarfò, Davide Rossi, Zadie Davis, Neus Villamor, Helen Parker, Jana Kotaskova, Evangelia Stalika, Karla Plevova, Larry Mansouri, Diego Cortese, Alba Navarro, Julio Delgado, Marta Larrayoz, Emma Young, Achilles Anagnostopoulos, Karin E. Smedby, Gunnar Juliusson, Oonagh Sheehy, Mark Catherwood, Jonathan C. Strefford, Niki Stavroyianni, Chrysoula Belessi, Sarka Pospisilova, David Oscier, Gianluca Gaidano, Elias Campo, Claudia Haferlach, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos
Tailored approaches grounded on immunogenetic features for refined prognostication in chronic lymphocytic leukemia
published pages: 360-369, ISSN: 0390-6078, DOI: 10.3324/haematol.2018.195032
Haematologica 104/2 2020-01-15
2018 Daniel Primo, Lydia Scarfò, Aliki Xochelli, Mattias Mattsson, Pamela Ranghetti, Ana Belén Espinosa, Alicia Robles, Julian Gorrochategui, Joaquín Martínez-López, Javier de la Serna, Marcos González, Alberto Chaparro Gil, Eduardo Anguita, Sandra Iraheta, Veerendra Munugalavadla, Christophe Quéva, Stacey Tannheimer, Richard Rosenquist, Kostas Stamatopoulos, Joan Ballesteros, Paolo Ghia
A novel ex vivo high-throughput assay reveals antiproliferative effects of idelalisib and ibrutinib in chronic lymphocytic leukemia
published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.25419
Oncotarget 9/40 2020-01-15
2017 Karol Pal, Vojtech Bystry, Tomas Reigl, Martin Demko, Adam Krejci, Tasoula Touloumenidou, Evangelia Stalika, Boris Tichy, Paolo Ghia, Kostas Stamatopoulos, Sarka Pospisilova, Jitka Malcikova, Nikos Darzentas
GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data
published pages: 3802-3804, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx423
Bioinformatics 33/23 2020-01-15
2018 J. Malcikova, E. Tausch, D. Rossi, L. A. Sutton, T. Soussi, T. Zenz, A. P. Kater, C. U. Niemann, D. Gonzalez, F. Davi, M. Gonzalez Diaz, C. Moreno, G. Gaidano, K. Stamatopoulos, R. Rosenquist, S. Stilgenbauer, P. Ghia, S. Pospisilova
ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemia—update on methodological approaches and results interpretation
published pages: 1070-1080, ISSN: 0887-6924, DOI: 10.1038/s41375-017-0007-7
Leukemia 32/5 2020-01-15
2016 Nikos Papakonstantinou, Stavroula Ntoufa, Elisavet Chartomatsidou, Konstantia Kotta, Andreas Agathangelidis, Lefki Giassafaki, Tzeni Karamanli, Panagiota Bele, Theodoros Moysiadis, Panagiotis Baliakas, Lesley Ann Sutton, Niki Stavroyianni, Achilles Anagnostopoulos, Antonios M. Makris, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos
The histone methyltransferase EZH2 as a novel prosurvival factor in clinically aggressive chronic lymphocytic leukemia
published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.9371
Oncotarget 2020-01-15
2016 P. Baliakas, A. Puiggros, A. Xochelli, L.-A. Sutton, F. Nguyen-Khac, A. Gardiner, K. Plevova, E. Minga, A. Hadzidimitriou, R. Walewska, H. McCarthy, M. Ortega, R. Collado, T. Gonzalez, I. Granada, E. Luno, J. Kota kova, T. Moysiadis, Z. Davis, N. Stavroyianni, A. Anagnostopoulos, J. C. Strefford, S. Pospisilova, F. Davi, A. Athanasiadou, R. Rosenquist, D. Oscier, B. Espinet, K. Stamatopoulos
Additional trisomies amongst patients with chronic lymphocytic leukemia carrying trisomy 12: the accompanying chromosome makes a difference
published pages: e299-e302, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.140202
Haematologica 101/7 2020-01-15
2016 V. Navrkalova, E. Young, P. Baliakas, L. Radova, L.-A. Sutton, K. Plevova, L. Mansouri, V. Ljungstrom, S. Ntoufa, Z. Davis, G. Juliusson, K. E. Smedby, C. Belessi, P. Panagiotidis, T. Touloumenidou, F. Davi, A. W. Langerak, P. Ghia, J. C. Strefford, D. Oscier, J. Mayer, K. Stamatopoulos, S. Pospisilova, R. Rosenquist, M. Trbusek
\"ATM mutations in major stereotyped subsets of chronic lymphocytic leukemia: enrichment in subset #2 is associated with markedly short telomeres\"
published pages: e369-e373, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.142968
Haematologica 101/9 2020-01-15
2016 R. Rosenquist, A. Rosenwald, M.-Q. Du, G. Gaidano, P. Groenen, A. Wotherspoon, P. Ghia, P. Gaulard, E. Campo, K. Stamatopoulos
Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond
published pages: 1002-1009, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.134510
Haematologica 101/9 2020-01-15
2016 L.-A. Sutton, E. Young, P. Baliakas, A. Hadzidimitriou, T. Moysiadis, K. Plevova, D. Rossi, J. Kminkova, E. Stalika, L. B. Pedersen, J. Malcikova, A. Agathangelidis, Z. Davis, L. Mansouri, L. Scarfo, M. Boudjoghra, A. Navarro, A. F. Muggen, X.-J. Yan, F. Nguyen-Khac, M. Larrayoz, P. Panagiotidis, N. Chiorazzi, C. U. Niemann, C. Belessi, E. Campo, J. C. Strefford, A. W. Langerak, D. Oscier, G. Gaidano, S. Pospisilova, F. Davi, P. Ghia, K. Stamatopoulos, R. Rosenquist
Different spectra of recurrent gene mutations in subsets of chronic lymphocytic leukemia harboring stereotyped B-cell receptors
published pages: 959-967, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.141812
Haematologica 101/8 2020-01-15

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The information about "MEDGENET" are provided by the European Opendata Portal: CORDIS opendata.

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