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CRYPTRANS

Characterization of newly discovered but poorly understood fungal-driven trophic processes in freshwater lake ecosystems by metatranscriptomic

Total Cost €

0

EC-Contrib. €

0

Partnership

0

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 CRYPTRANS project word cloud

Explore the words cloud of the CRYPTRANS project. It provides you a very rough idea of what is the project "CRYPTRANS" about.

functional    progressive    datasets    dna    abound    overarching    communities    accessible    drive    fungi    metatranscriptomics    ultimate    sequencing    substantial    jointly    readily    poorly    pools    chytridiomycota    biological    boundaries    world    disciplines    forefront    large    molecular    normally    combination    deepest    questions    generation    shown    recent    gradients    services    parts    sampling    team    ecology    organisms    unexplored    predominantly    science    freshwater    largely    remote    anthropogenic    pursuit    systematics    ecosystems    group    phyla    sites    taxonomy    device    implications    habitats    host    understand    identification    there    push    organic    he    convert    diversity    trophic    rna    capture    intent    metagenomics    pressure    tech    position    brings    thought    nutrients    locations    cryptomycota    settings    roles    stable    ecological    sequence    fungal    vibrant    expertise    functions    levels    redefine   

Project "CRYPTRANS" data sheet

The following table provides information about the project.

Coordinator
GOETEBORGS UNIVERSITET 

Organization address
address: VASAPARKEN
city: GOETEBORG
postcode: 405 30
website: www.gu.se

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Sweden [SE]
 Project website http://tinyurl.com/n4bc9sj
 Total cost 185˙857 €
 EC max contribution 185˙857 € (100%)
 Programme 1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
 Code Call H2020-MSCA-IF-2014
 Funding Scheme MSCA-IF-EF-ST
 Starting year 2015
 Duration (year-month-day) from 2015-07-01   to  2017-06-30

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    GOETEBORGS UNIVERSITET SE (GOETEBORG) coordinator 185˙857.00

Map

 Project objective

Recent research has shown that freshwater systems, and particularly their deepest parts, abound with fungi. These fungi (predominantly in the poorly understood phyla Chytridiomycota and Cryptomycota) are largely new to science and are thought to be involved in ecological processes that convert organic matter into nutrients readily accessible to organisms at higher trophic levels. Given the ever-increasing anthropogenic pressure on freshwater systems, we need to understand these processes and the organisms involved in substantial detail. The present project will characterize these new fungi and detail the processes and ecological services they drive through next-generation sequencing of DNA (metagenomics) and RNA (metatranscriptomics) pools in freshwater depth gradients. The overarching questions are: (1) What fungi are down there? (2) What are their functions and roles? and (3) What are the implications for the study of fungi, freshwater ecosystems, and ecology at large? This combination of taxonomy/systematics and ecological/functional research questions applied to these most unexplored and remote ecological settings represents a novel approach on freshwater systems and biological diversity - one with the potential to redefine the pursuit of biological research questions across biological disciplines and beyond habitats normally targeted. The applicant has developed a new high-tech sampling device capable of stable RNA/DNA capture down to 100 m depth, and he brings substantial expertise on functional and ecological assessment of metagenomics sequence datasets to the project. The host research group is the world authority on molecular identification of fungi and comparison of fungal communities across sites and locations. Jointly this team is in a position to push the boundaries of biological knowledge, with the ultimate intent to allow the applicant to establish a progressive, vibrant research group at the very forefront of freshwater systems research in Europe.

 Publications

year authors and title journal last update
List of publications.
2017 R. Henrik Nilsson, Marisol Sánchez-García, Martin K. Ryberg, Kessy Abarenkov, Christian Wurzbacher, Erik Kristiansson
Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory
published pages: 13-24, ISSN: 1314-4049, DOI: 10.3897/mycokeys.26.14591
MycoKeys 26 2019-07-24

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The information about "CRYPTRANS" are provided by the European Opendata Portal: CORDIS opendata.

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