POLYLOOP

"Policing mammalian transcriptomes: regulation of long ncRNA synthesis by transcriptional termination, gene loops and R-loops."

Coordinatore	THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD    more Spiacenti, non ci sono informazioni su questo coordinatore. Contattare Fabio per maggiori infomrazioni, grazie.
Nazionalità Coordinatore	United Kingdom [UK]
Totale costo	2˙499˙464 €
EC contributo	2˙499˙464 €
Programma	FP7-IDEAS-ERC Specific programme: "Ideas" implementing the Seventh Framework Programme of the European Community for research, technological development and demonstration activities (2007 to 2013)
Code Call	ERC-2013-ADG
Funding Scheme	ERC-AG
Anno di inizio	2014
Periodo (anno-mese-giorno)	2014-02-01   -   2019-01-31

 Partecipanti

#	participant	country	role	EC contrib. [€]
1	THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD  Organization address address: University Offices, Wellington Square city: OXFORD postcode: OX1 2JD contact info Titolo: Ms. Nome: Gill Cognome: Wells Email: send email Telefono: +44 1865 289800 Fax: +44 1865 289801	UK (OXFORD)	hostInstitution	2˙499˙464.00
2	THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD  Organization address address: University Offices, Wellington Square city: OXFORD postcode: OX1 2JD contact info Titolo: Prof. Nome: Nicholas Jarvis Cognome: Proudfoot Email: send email Telefono: 441865000000 Fax: 441865000000	UK (OXFORD)	hostInstitution	2˙499˙464.00

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 Obiettivo del progetto (Objective)

'.Mammalian transcriptome analysis reveals that while most of the genome is transcribed, only a minority fraction produces protein coding, messenger RNA or functional, structural RNA. Instead a substantial fraction is transcribed, often tissue specifically, into long non coding (lnc)RNA of mostly unknown function. Many lncRNA are rapidly degraded and may reflect promiscuous, non-functional transcription. However some lncRNA have important cellular functions. I reason that defining promoters and terminators of lncRNA genes will provide valuable information on which lncRNA are likely to be functional. LncRNA gene promoters often correspond to nucleosome depleted regions of protein coding gene promoters and enhancers, which generate bidirectional transcription. Regions of single-strand DNA, exposed by R-loop formation can also initiate transcription and so act as a potential source of lncRNA, as will be investigated here. Since transcription initiation of lncRNA genes appears relatively promiscuous, terminating lncRNA transcription may be of critical importance. This will prevent read-through transcription with consequent negative affects on downstream genes by transcriptional interference or the formation of overlapping transcripts leading to RNA interference effects. Consequently I will focus on transcription termination mechanisms of lncRNA genes. I will determine if known protein coding gene terminators also operate for lncRNA genes or whether many lncRNA use alternative termination mechanisms. In particular I will investigate the role of G-rich pausing elements that promote Pol II termination by forming R-loop structures on lncRNA genes. I will also investigate which classes of lncRNA genes form gene loop conformations when transcribed, as a likely identifier of more highly expressed, functional lncRNA. Overall I predict that understanding how lncRNA are synthesised will provide critical information on which lncRNA warrant scrutiny as likely functional transcripts'