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LEUKEMIC-TEs

Unveiling the signature of transposable elements-derived transcripts – the transposcriptome – as a biomarker in human acute myeloid leukemia

Total Cost €

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EC-Contrib. €

0

Partnership

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 LEUKEMIC-TEs project word cloud

Explore the words cloud of the LEUKEMIC-TEs project. It provides you a very rough idea of what is the project "LEUKEMIC-TEs" about.

pluripotency    frequent    identification    gene    cells    pipelines    genome    directed    unexplored    cell    expression    adults    solely    human    relapsed    proper    aberrant    characterization    te    invaluable    basis    sequencing    explained    advent    chromosomes    aml    industry    transposable    exclusive    biomarkers    science    malignant    lack    oncoproteins    largely    precursors    academy    scientific    decisive    immunotherapeutically    hematopoietic    roles    accomplishment    achievement    ideal    samples    linked    therapies    cancer    technologies    background    tes    soft    thirds    researcher    homology    leukemias    categorization    cd34cd38    fractions    provides    create    tool    reprogramming    excellence    coverage    demonstrated    leukemia    subclassification    mediocre    throughput    limited    skills    difficult    patients    epigenetics    acute    existence    signature    networks    denser    complementary    treat    normal    regulation    tumorigenesis    progenitors    stem    bridge    tumorigenic    collaborations    outcome    thought    myeloid    lsc    transcriptome    analytical   

Project "LEUKEMIC-TEs" data sheet

The following table provides information about the project.

Coordinator
ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE 

Organization address
address: BATIMENT CE 3316 STATION 1
city: LAUSANNE
postcode: 1015
website: www.epfl.ch

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Switzerland [CH]
 Project website https://tronolab.epfl.ch
 Total cost 175˙419 €
 EC max contribution 175˙419 € (100%)
 Programme 1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
 Code Call H2020-MSCA-IF-2016
 Funding Scheme MSCA-IF-EF-ST
 Starting year 2017
 Duration (year-month-day) from 2017-04-01   to  2019-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE CH (LAUSANNE) coordinator 175˙419.00

Map

 Project objective

Acute myeloid leukemia (AML) is the most common of the acute leukemias among adults. Relapsed AML patients are frequent but difficult to treat since effective therapies are limited. This mediocre outcome can be partially explained by the presence of leukemia stem cells (LSC) that maintain an aberrant hematopoietic process. LSC in AML were traditionally thought to be solely CD34CD38- cells. However, recent studies demonstrated the presence of LSC in cell fractions thought to be non-tumorigenic. Finding an LSC-specific signature would be decisive for a better categorization of patients and LSC exclusive targeting. This project considers the signature of transposable elements (TEs) as an ideal tool for the identification of LSC. TEs, with important roles in gene regulation, are linked to the reprogramming process to pluripotency and they are associated with tumorigenesis. Since they contribute up to two thirds of the human genome, TEs expression provides much denser coverage of chromosomes than gene-derived transcriptome. TEs signature in cancer has so far been largely unexplored per lack of proper technologies. The advent of high-throughput sequencing and the development of TE-directed analytical pipelines allow now the accomplishment of this project. The present proposal includes a comprehensive characterization of TEs transcriptome in normal and malignant hematopoietic precursors. An expected result is the achievement of a better subclassification of AML samples on the basis of their TEs expression homology to normal progenitors. The project will investigate the existence of TE-derived oncoproteins exclusive for LSC that could be immunotherapeutically targeted. This proposal has impact on the excellence of European science since it will create new collaborations and networks to find AML biomarkers. It would bridge academy with industry and will bring invaluable complementary scientific and soft skills to a researcher with an ideal background in cancer epigenetics.

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