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Opendata, web and dolomites

GenCoder

The first MPEG-G compliant software tools for efficient compression, storage, transport and analysis of genomic data enabling systems interoperability

Total Cost €

EC-Contrib. €

Partnership

Views

Outcomes and
results

GenCoder project word cloud

Explore the words cloud of the GenCoder project. It provides you a very rough idea of what is the project "GenCoder" about.

lossless accumulation cross genomsys transport exponential huge formats tool optimization amount compliance facilities life drastic accepted software standard rates validation significantly faster plan tb genomic impacted metadata enormously data centres human biotech efficient enabled sciences institutes scalable respect ineffective 850 correlating iso massive protocols pricing contributor datasets next prevents bio price sequencing speed amongst generation tests performances group stored cumbersome genome outcomes blocks model compression released selective size usd banks 2019 clinics 90 lack informatics bam ngs marketing companies provides consolidates joint ed vast imply designed storage gencoder representation standardized strategy business financial mpeg interoperability mode

Project "GenCoder" data sheet

The following table provides information about the project.

Coordinator	GENOMSYS SA Organization address address: FONDATION EPFL INNOVATION PARK BATIMENT C ROUTE CANTONALE city: LAUSANNE postcode: 1015 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Switzerland [CH]
Project website	https://genomsys.com/
Total cost	71˙429 €
EC max contribution	50˙000 € (70%)
Programme	1. H2020-EU.3. (PRIORITY 'Societal challenges) 2. H2020-EU.2.3. (INDUSTRIAL LEADERSHIP - Innovation In SMEs) 3. H2020-EU.2.1. (INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies)
Code Call	H2020-SMEInst-2018-2020-1
Funding Scheme	SME-1
Starting year	2018
Duration (year-month-day)	from 2018-07-01 to 2018-12-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	GENOMSYS SA GENOMSYS SA Organization address address: FONDATION EPFL INNOVATION PARK BATIMENT C ROUTE CANTONALE city: LAUSANNE postcode: 1015 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CH (LAUSANNE)	coordinator	50˙000.00

Map

Project objective

Next-Generation Sequencing (NGS) devices have enormously impacted on genomic analysis and life sciences, with a drastic price reduction for sequencing a human genome (1,000 USD) and faster data processing, which resulted in the exponential accumulation of genomic data. However, the vast amount of genomic data produced and stored in clinics, research institutes, bio-banks and biotech companies is bringing along cumbersome informatics challenges: the huge amount of data to be stored imply massive costs for data storage (850 €/TB per year, with average size of a whole human genome being in the range of 0.4-3 TB), also due to the use of ineffective data formats not specifically designed for genomic data; the lack of interoperability and standardized software and protocols prevents genome analysis centres to implement reliable, scalable, and widely-accepted applications for cross-correlating and comparing genomic data. GenCoder by GenomSys is a software tool specifically designed for efficient genomic information representation, compression and transport, which provides the following main performances: (1) High compression rates in lossless mode (up to 90% with respect to the BAM standard); (2) Selective access to specific blocks of data and metadata, so to significantly speed-up data analysis; (3) Interoperability amongst available data formats, enabled by the compliance with the ISO standard MPEG-G (to be released in 2019), which is being developed by a joint working group having GenomSys as main contributor. The Phase 1 project will have as main outcomes the optimization and validation of the GenCoder performances through tests involving huge datasets in selected data sequencing and storage facilities, and the business plan of the product, which consolidates the business model and pricing, the marketing strategy, and the financial plan.

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The information about "GENCODER" are provided by the European Opendata Portal: CORDIS opendata.