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NeuroVisEco SIGNED

Zebrafish vision in its natural context: from natural scenes through retinal and central processing to behaviour.

Total Cost €

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EC-Contrib. €

0

Partnership

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 NeuroVisEco project word cloud

Explore the words cloud of the NeuroVisEco project. It provides you a very rough idea of what is the project "NeuroVisEco" about.

neurons    input    permitting    channels    driving    model    detection    easily    natural    poorly    eye    mice    environments    optical    specialised    blueprint    quantifiable    manipulate    generalised    strategies    phylogenetic    record    fish    form    serve    virtual    imaging    undergo    optics    deeply    array    stimuli    tell    animal    entire    vertebrate    transparent    probe    environment    manipulations    world    recorded    life    begin    species    adult    adaptations    photon    samples    neuronal    functional    larva    database    behaviourally    subsequently    behaviours    vision    biological    stages    computational    rooted    pursue    movements    complementary    levels    selective    larval    computation    exquisite    employed    all    zebrafish    see    niche    sensory    powerful    genetic    organisational    behaviour    designed    circuits    optogenetic    output    nervous    visual    retina    navigate    developmental    hence    lifestyles    specialisations    brain    tools    eyes   

Project "NeuroVisEco" data sheet

The following table provides information about the project.

Coordinator
THE UNIVERSITY OF SUSSEX 

Organization address
address: SUSSEX HOUSE FALMER
city: BRIGHTON
postcode: BN1 9RH
website: http://www.sussex.ac.uk

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country United Kingdom [UK]
 Project website http://www.badenlab.org
 Total cost 1˙500˙000 €
 EC max contribution 1˙500˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2015-STG
 Funding Scheme ERC-STG
 Starting year 2016
 Duration (year-month-day) from 2016-06-01   to  2021-05-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    THE UNIVERSITY OF SUSSEX UK (BRIGHTON) coordinator 1˙500˙000.00

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 Project objective

All visual systems are specialised to best serve an animal’s sensory niche, yet how such specialisations are achieved through phylogenetic and developmental adaptations of the ‘common vertebrate visual system blueprint’ are poorly understood. I will study these adaptations in the visual system of zebrafish. I will use two-photon functional imaging and computational modelling to investigate how the visual system of zebrafish samples and processes behaviourally meaningful stimuli in the natural world. I will then use optogenetic manipulations while zebrafish navigate a virtual reality environment to directly probe the role of visual circuits in driving behaviour. Specifically, I will pursue four Aims:

1. What is the zebrafish eye designed to see? 2. How does the fish retina form feature selective output channels? 3. What does the fish’s eye tell the fish’s brain? 4. How does visual input to the brain lead to behaviour?

Visual specialisations begin in the optics and movements of the eyes, and are subsequently deeply rooted in every step of neuronal computation. Therefore, I will study visual processing at these different organisational levels. Here, the highly ‘visual’ zebrafish present a powerful model. They (i) offer exquisite genetic tools to record and manipulate neurons, (ii) have transparent larval stages permitting optical access to the entire nervous system and (iii) there is a large array of well-studied and easily quantifiable visual behaviours. In addition, zebrafish undergo two distinct life-stages, from larva to adult - with distinct lifestyles in different visual environments and hence different feature-detection requirements. Comparison of processing strategies employed by the (a) larval and (b) adult zebrafish visual system with that of other species, including a complementary database already recorded in mice (c), will lead to an increasingly generalised understanding of biological vision.

 Publications

year authors and title journal last update
List of publications.
2018 Maxime J.Y. Zimmermann, Noora E. Nevala, Takeshi Yoshimatsu, Daniel Osorio, Dan-Eric Nilsson, Philipp Berens, Tom Baden
Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes
published pages: 2018-2032.e5, ISSN: 0960-9822, DOI: 10.1016/j.cub.2018.04.075
Current Biology 28/13 2019-10-29
2017 Tom Baden, Frank Schaeffel, Philipp Berens
Visual Neuroscience: A Retinal Ganglion Cell to Report Image Focus?
published pages: R139-R141, ISSN: 0960-9822, DOI: 10.1016/j.cub.2016.12.022
Current Biology 27/4 2019-10-29
2016 Thomas Euler and Tom Baden
Computational Neuroscience: Species Specific Motion Detectors
published pages: 45,46, ISSN: , DOI:
Nature 535 2019-10-29
2018 Tom Baden, Timm Schubert, Philipp Berens, Thomas Euler
The Functional Organization of Vertebrate Retinal Circuits for Vision
published pages: N/A, ISSN: , DOI: 10.1093/acrefore/9780190264086.013.68
Oxford Research Encyclopedias, Neuroscience Online 2019-10-29
2017 Andre Maia Chagas, Lucia L. Prieto-Godino, Aristides B. Arrenberg, Tom Baden
The €100 lab: A 3D-printable open-source platform for fluorescence microscopy, optogenetics, and accurate temperature control during behaviour of zebrafish, Drosophila, and Caenorhabditis elegans
published pages: e2002702, ISSN: 1545-7885, DOI: 10.1371/journal.pbio.2002702
PLOS Biology 15/7 2019-10-29
2017 Katrin Franke, Philipp Berens, Timm Schubert, Matthias Bethge, Thomas Euler, Tom Baden
Inhibition decorrelates visual feature representations in the inner retina
published pages: 439-444, ISSN: 0028-0836, DOI: 10.1038/nature21394
Nature 542/7642 2019-10-29
2017 Katrin Franke, Tom Baden
General features of inhibition in the inner retina
published pages: 5507-5515, ISSN: 0022-3751, DOI: 10.1113/JP273648
The Journal of Physiology 595/16 2019-10-29
2018 Tom Baden, Ben James, Maxime J. Y. Zimmermann, Phillip Bartel, Dorieke Grijseels, Thomas Euler, Leon Lagnado, Miguel Maravall
Spikeling: A low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach
published pages: e2006760, ISSN: 1545-7885, DOI: 10.1371/journal.pbio.2006760
PLOS Biology 16/10 2019-10-29
2016 Tom Baden, Thomas Euler
Retinal Physiology: Non-Bipolar-Cell Excitatory Drive in the Inner Retina
published pages: R706-R708, ISSN: 0960-9822, DOI: 10.1016/j.cub.2016.03.065
Current Biology 26/15 2019-10-29
2017 C. J. Forman, H. Tomes, B. Mbobo, R. J. Burman, M. Jacobs, T Baden, J. V. Raimondo
Openspritzer: an open hardware pressure ejection system for reliably delivering picolitre volumes
published pages: 2188, ISSN: 2045-2322, DOI: 10.1038/s41598-017-02301-2
Scientific Reports 7/1 2019-10-29
2019 Thomas Euler, Katrin Franke , Tom Baden
Studying a Light Sensor with Light: Multiphoton Imaging in the Retina
published pages: , ISSN: , DOI: 10.20944/preprints201903.0244.v1
2019-08-05
2019 Katrin Franke, Andre Maia Chagas, Zhijian Zhao, Maxime J.Y. Zimmermann, Yongrong Qiu, Klaudia Szatko, Tom Baden, Thomas Euler
An arbitrary-spectrum spatial visual stimulator for vision research
published pages: , ISSN: , DOI: 10.1101/649566
2019-08-05

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