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MICROWINE SIGNED

MICROWINE - Microbial metagenomics and the modern wine industry

Total Cost €

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EC-Contrib. €

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Partnership

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 MICROWINE project word cloud

Explore the words cloud of the MICROWINE project. It provides you a very rough idea of what is the project "MICROWINE" about.

conferring    anticipate    forefront    actions    microwine    scientists    diverse    amplicon    maximise    interdisciplinary    multiple    power    billion    plant    220    stages    roles    interplay    plants    network    15    geochemistry    revolutionised    esr    poorly    computation    cohort    metagenomic    driving    characterise    worth    disciplines    microbes    transfer    esrs    theme    pathogens    characterised    biology    samples    collected    microbiological    nutrition    protection    array    action    vinification    viniculture    scientific    fermentation    secondments    microbiology    marie    dna    nutrients    heart    soil    computational    flavours    curie    globally    industry    strength    aromas    wine    techniques    microbial    sequencing    progress    constructed    generation    modern    close    academic    combining    shotgun    metabolomics    train    helping    lies    powerful    interconnected    health    cosupervision    tightly    deep    training    benefit    metadata    play    host    transform    community    genomic    microorganisms   

Project "MICROWINE" data sheet

The following table provides information about the project.

Coordinator
AARHUS UNIVERSITET 

Organization address
address: NORDRE RINGGADE 1
city: AARHUS C
postcode: 8000
website: www.au.dk

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Denmark [DK]
 Project website http://microwine.eu/
 Total cost 3˙945˙597 €
 EC max contribution 3˙945˙597 € (100%)
 Programme 1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
 Code Call H2020-MSCA-ITN-2014
 Funding Scheme MSCA-ITN-ETN
 Starting year 2015
 Duration (year-month-day) from 2015-01-01   to  2018-12-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    AARHUS UNIVERSITET DK (AARHUS C) coordinator 580˙163.00
2    KOBENHAVNS UNIVERSITET DK (KOBENHAVN) participant 580˙163.00
3    DANMARKS TEKNISKE UNIVERSITET DK (KGS LYNGBY) participant 290˙081.00
4    THE UNIVERSITY OF WARWICK UK (COVENTRY) participant 273˙287.00
5    INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE FR (LE CHESNAY CEDEX) participant 262˙875.00
6    INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT FR (PARIS CEDEX 07) participant 262˙875.00
7    UNIVERSITE DE BORDEAUX FR (BORDEAUX) participant 262˙875.00
8    STICHTING VU NL (AMSTERDAM) participant 255˙374.00
9    MINISTERIUM FUER UMWELT, LANDWIRTSCHAFT, ERNAEHRUNG, WEINBAU UND FORSTEN RHEINLAND- PFALZ DE (MAINZ) participant 249˙216.00
10    UNIVERSIDAD DE ZARAGOZA ES (ZARAGOZA) participant 247˙872.00
11    INSTITUTO SUPERIOR DE AGRONOMIA PT (LISBOA) participant 238˙356.00
12    UNIVERSIDADE CATOLICA PORTUGUESA PT (LISBOA) participant 238˙356.00
13    UNIVERSIDAD NACIONAL DE LA PLATA AR (LA PLATA) participant 204˙096.00
14    Agrarian Research and Development Center GE (Tbilisi) partner 0.00
15    Ansilta S.A. AR (La Plata) partner 0.00
16    Biodiscovery, LLC US (ann arbor) partner 0.00
17    CHR. HANSEN A/S DK (HOERSHOLM) partner 0.00
18    CURTIN UNIVERSITY OF TECHNOLOGY AU (PERTH) partner 0.00
19    Screenwood, LDA PT (Almeirim) partner 0.00
20    THE REGENTS OF THE UNIVERSITY OF CALIFORNIA US (OAKLAND CA) partner 0.00
21    UNIVERSIDAD NACIONAL DE QUILMES AR (BERNAL) partner 0.00

Map

 Project objective

A diverse, complex, and poorly characterised community of microorganisms lies at the heart of the wine – an industry worth over €220 billion globally. These microorganisms play key roles at all stages of the viniculture and vinification processes, from helping plants access nutrients from the soil, driving their health through protection against pathogens, to fermentation processes that transform the must into wine with its complex array of aromas and flavours. Given this importance, an improved understanding of the microbial community and its interplay will have significant effects on the industry. In recent years, 'Next Generation' DNA sequencing has revolutionised many areas of biology, including microbiology, through conferring the ability to characterise microbes on the deep community scale, through both ’shotgun’ and ’deep amplicon’ sequencing approaches. To exploit this power for the benefit of the wine industry, we propose MICROWINE, a 15 ESR Marie Curie Actions European Training Network. The network is constructed as a close collaboration between industry and academic partners, around the theme of the microbial community’s role in the wine production process. Through combining microbial metagenomic sequencing with powerful computation analyses, with metadata generated using techniques such as metabolomics and geochemistry, we will study the action of microbes from the plant protection and nutrition, through to wine fermentation process, using samples collected from both Europe and beyond. We will further train the ESRs across a wide range of relevant disciplines, and maximise information transfer through multiple host and academic-industry cosupervision and secondments. In this way, we anticipate contributing to the strength and scientific progress of the wine industry through training of a cohort of leading, interdisciplinary and tightly interconnected scientists at the forefront of modern microbiological, genomic, computational and related techniques.

 Deliverables

List of deliverables.
PhD theses submission Other 2020-04-22 23:14:24
Training event 5 Other 2020-04-22 23:14:23
Training event 7 Documents, reports 2020-04-22 23:14:24
Publications for each WP (WP3-WP5) Other 2020-04-22 23:14:24
Training event 6 Other 2020-04-22 23:14:23
Training event 2 Other 2020-04-22 23:14:22
Training events 3 Other 2020-04-22 23:14:22
Training events 1 Other 2020-04-22 23:14:22
Training events 4 Other 2020-04-22 23:14:22

Take a look to the deliverables list in detail:  detailed list of MICROWINE deliverables.

 Publications

year authors and title journal last update
List of publications.
2019 Giovanni Del Frari
Frontiers in the control of pathogenic fungi associated with the esca disease complex
published pages: , ISSN: , DOI:
2020-04-22
2019 Franziska Klincke, Martin Abel-Kistrup, Sofie Maria Gilberte Saerens, Simon Rasmussen
Analysing complex metagenomic data with MicroWineBar
published pages: , ISSN: , DOI: 10.1101/742684
Biorxiv 2020-04-22
2019 Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo Boavida Ferreira
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms
published pages: , ISSN: 1664-462X, DOI: 10.3389/fpls.2019.00910
Frontiers in Plant Science 10 2020-04-22
2019 Ifigeneia Kyrkou, Alexander Byth Carstens, Lea Ellegaard-Jensen, Witold Kot, Athanasios Zervas, Amaru Miranda Djurhuus, Horst Neve, Martin Hansen, Lars Hestbjerg Hansen
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum—A Novel Lineage of Lactobacillus Phages Comprising Five New Members
published pages: 611, ISSN: 1999-4915, DOI: 10.3390/v11070611
Viruses 11/7 2020-04-22
2018 GioVAnni DEL FRARI, João COSTA, HeLenA OLIVEIRA and RiCARdo BOAVIDA FERREIRA
Endotherapy of infected grapevine cuttings for the control of Phaeomoniella chlamydospora and Phaeoacremonium minimum
published pages: , ISSN: 1593-2095, DOI: 10.14601/phytopathol_mediterr-23515
Phytopathologia Mediterranea 2020-04-22
2019 Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar
Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.01347
Frontiers in Microbiology 10 2020-04-22
2018 Ingrid Collombel
Post-alcoholic fermentation micro-ecology of wines: the role of phenolic composition and the effects on quality
published pages: , ISSN: , DOI:
2020-04-22
2018 Gobbi Alex, Kyrkou Ifigeneia, Filippi Elisa, Ellegaard-Jensen Lea, Hansen Lars Hestbjerg
Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
published pages: , ISSN: , DOI: 10.1101/523977
Bioxriv 2020-04-22
2019 Inès Oliveira; Vicente Ferreira
Modulating Fermentative, Varietal and Aging Aromas of Wine Using non-Saccharomyces Yeasts in a Sequential Inoculation Approach
published pages: 1-23, ISSN: 2076-2607, DOI: 10.3390/microorganisms7060164
Microorganisms 12 per year 2020-04-22
2019 Ingrid Collombel, Francisco Campos, Tim Hogg
Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds
published pages: 1, ISSN: 2311-5637, DOI: 10.3390/fermentation5010001
Fermentation 5/1 2020-04-22
2019 Marc P. Lorentzen, Hugo Campbell-Sills, Tue S. Jorgensen, Tue K. Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick M. Lucas
Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-019-5692-3
BMC Genomics 20/1 2020-04-22
2019 Ines Pereira Biscaia de Oliveira
Contribution of wine microorganisms to the aroma composition of wine and its sensory impact
published pages: , ISSN: , DOI:
2020-04-22
2019 Alex Gobbi
Exploring the molecular basis of microbial wine-terroir
published pages: , ISSN: , DOI:
PhD thesis 2020-04-22
2019 Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten S. Jacobsen, Lars H. Hansen
Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR
published pages: e0200979, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0200979
PLOS ONE 14/4 2020-04-22
2019 Kimmo Sirén, Sarah Siu Tze Mak, Chrats Melkonian, Christian Carøe, Jan Hendrik Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.00697
Frontiers in Microbiology 10 2020-04-22
2019 Hsiao-Lei Liu
Grape Evolution in the Human Environment
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Mónica Oyuela Aguilar
Analysis of grape wine microbiota from different wine producing regions and thier plant growth promoting properties
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Lorentzen, Marc Lucas, Patrick
Distribution of Oenococcus oeni populations in natural habitats
published pages: 0175-7598/2937-2, ISSN: 1432-0614, DOI: 10.1007/s00253-019-09689-z
Applied Microbiolology and Biotechnology 103 2020-04-22
2019 Franziska Klinke
Metagenomics in wine fermentation
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Marc Lorentzen
Diversité et caractéristiques génomiques d\'Oenococcus oeni
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Taneli Pusa, Martin Wannagat, Marie-France Sagot
Metabolic Games
published pages: , ISSN: 2297-4687, DOI: 10.3389/fams.2019.00018
Frontiers in Applied Mathematics and Statistics 5 2020-04-22
2019 Kimmo Sirén, Sarah Siu Tze Mak, Ulrich Fischer, Lars Hestbjerg Hansen, M Thomas P Gilbert
Multi-omics and potential applications in wine production
published pages: 172-178, ISSN: 0958-1669, DOI: 10.1016/j.copbio.2018.11.014
Current Opinion in Biotechnology 56 2020-04-22
2018 Ifigeneia Kyrkou
Control of Bacteria for Sustainable Viticulture and Vinification Practices
published pages: , ISSN: , DOI:
2020-04-22
2018 Ifigeneia Kyrkou, Taneli Pusa, Lea Ellegaard-Jensen, Marie-France Sagot, Lars Hestbjerg Hansen
Pierce\'s Disease of Grapevines: A Review of Control Strategies and an Outline of an Epidemiological Model
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.02141
Frontiers in Microbiology 9 2020-04-22
2019 Kimmo Sirén, Ulrich Fischer, Jochen Vestner
Automated supervised learning pipeline for non-targeted GC-MS data analysis
published pages: 100005, ISSN: 2590-1346, DOI: 10.1016/j.acax.2019.100005
Analytica Chimica Acta: X 1 2020-04-22
2019 Henri Taneli Pusa
Mathematical modelling of the impacts of environment using metabolic networks and game theory
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Kimmo Sirén
Multi-omics Methods to unravel Microbial Diversity in Fermentation of Riesling Wines
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2018 Prashant Singh, Sylvain Santoni, Patrice This, Jean-Pierre Péros
Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach
published pages: 96, ISSN: 2076-2607, DOI: 10.3390/microorganisms6040096
Microorganisms 6/4 2020-04-22
2018 Prashant Singh, Alex Gobbi, Sylvain Santoni, Lars H Hansen, Patrice This, Jean-Pierre Péros
Assessing the impact of plant genetic diversity in shaping the microbial community structure of Vitis vinifera phyllosphere in the Mediterranean
published pages: 35-46, ISSN: 2155-3769, DOI: 10.1080/21553769.2018.1552628
Frontiers in Life Science 11/1 2020-04-22
2018 Prashant Singh
Microbial Assemblage in Grapevine\'s Phyllosphere: Who is the driver ?
published pages: , ISSN: , DOI:
2020-04-22
2018 Sarah ST Mak
Riesling, ferments, microbes −The development and application of NGS tools in the context of winemaking
published pages: , ISSN: , DOI:
PhD Thesis 2020-04-22
2019 Lorentzen, Marc Lucas, Patrick
Distribution of Oenococcus oeni populations in natural habitats
published pages: 0175-7598/2937-2, ISSN: 1432-0614, DOI: 10.1007/s00253-019-09689-z
Applied Microbiolology and Biotechnology 103 2020-04-22
2017 Sarah Siu Tze Mak, Shyam Gopalakrishnan, Christian Carøe, Chunyu Geng, Shanlin Liu, Mikkel-Holger S Sinding, Lukas F K Kuderna, Wenwei Zhang, Shujin Fu, Filipe G Vieira, Mietje Germonpré, Hervé Bocherens, Sergey Fedorov, Bent Petersen, Thomas Sicheritz-Pontén, Tomas Marques-Bonet, Guojie Zhang, Hui Jiang, M Thomas P Gilbert
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
published pages: 1-13, ISSN: 2047-217X, DOI: 10.1093/gigascience/gix049
GigaScience 6/8 2020-04-22
2016 Elisa Salvetti, Stefano Campanaro, Ilenia Campedelli, Fabio Fracchetti, Alex Gobbi, Giovanni Battista Tornielli, Sandra Torriani, Giovanna E. Felis
Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2016.00937
Frontiers in Microbiology 7 2020-04-22

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