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OpenMinTeD

Open Mining INfrastructure for TExt and Data

Total Cost €

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EC-Contrib. €

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Partnership

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 OpenMinTeD project word cloud

Explore the words cloud of the OpenMinTeD project. It provides you a very rough idea of what is the project "OpenMinTeD" about.

industrial    centres    sciences    social    fosters    services    annotate    providers    scientific    interfaces    supports    recent    layer    acting    registriesand    world    structuring    unstructured    quantities    facilitates    tolife    combinable    agriculture    literaturerelated    items    structured    aspires    interoperablethrough    easily    primary    content    appropriate    smes    multiple    insights    developers    draw    mining    scholarly    data    nor    vision    infrastructure    communities    alike    tools    tomake    upsurge    power    builders    extract    accessed    virtuous    food    harnessing    training    openminted    searching    discoverable    infrastructural    communication    renders    goals    computing    actionable    players    experts    powerful    humanities    ranging    brings    patterns    publications    respectively    tool    indexing    interoperability    discover    witness    standardised    digital    merits    documented    hidden    dimensions    builds    analysing    rules    platforms    technologies    relations    cycle    standards    tandem    scholars    creation    firing    solutions    levels    demonstrates    stakeholders   

Project "OpenMinTeD" data sheet

The following table provides information about the project.

Coordinator
ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS 

Organization address
address: ARTEMIDOS 6 KAI EPIDAVROU
city: MAROUSSI
postcode: 151 25
website: www.athena-innovation.gr

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Greece [EL]
 Project website http://openminted.eu
 Total cost 6˙068˙072 €
 EC max contribution 5˙375˙535 € (89%)
 Programme 1. H2020-EU.1.4.1.3. (Development, deployment and operation of ICT-based e-infrastructures)
 Code Call H2020-EINFRA-2014-2
 Funding Scheme RIA
 Starting year 2015
 Duration (year-month-day) from 2015-06-01   to  2018-05-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS EL (MAROUSSI) coordinator 815˙937.00
2    THE UNIVERSITY OF MANCHESTER UK (MANCHESTER) participant 514˙850.00
3    TECHNISCHE UNIVERSITAT DARMSTADT DE (DARMSTADT) participant 512˙500.00
4    THE UNIVERSITY OF SHEFFIELD UK (SHEFFIELD) participant 506˙250.00
5    INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT FR (PARIS CEDEX 07) participant 425˙000.00
6    BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION ES (BARCELONA) participant 412˙914.00
7    THE OPEN UNIVERSITY UK (MILTON KEYNES) participant 363˙213.00
8    AGROKNOW IKE EL (MAROUSI) participant 320˙250.00
9    GESIS-LEIBNIZ-INSTITUT FUR SOZIALWISSENSCHAFTEN EV DE (MANNHEIM) participant 300˙500.00
10    NATIONAL INFRASTRUCTURES FOR RESEARCH AND TECHNNOLOGY EL (ATHINA) participant 285˙750.00
11    STICHTING LIBER NL (DEN HAAG) participant 272˙500.00
12    EUROPEAN MOLECULAR BIOLOGY LABORATORY DE (HEIDELBERG) participant 262˙187.00
13    UNIVERSITY OF GLASGOW UK (GLASGOW) participant 160˙720.00
14    FUNDACION CENTRO NACIONAL DE INVESTIGACIONES ONCOLOGICAS CARLOS III ES (MADRID) participant 146˙960.00
15    THE UNIVERSITY OF STIRLING UK (STIRLING) participant 39˙487.00
16    UNIVERSITEIT VAN AMSTERDAM NL (AMSTERDAM) participant 36˙515.00
17    ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE CH (LAUSANNE) participant 0.00
18    FRONTIERS MEDIA SA CH (Lausanne) participant 0.00

Map

 Project objective

Recent years witness an upsurge in the quantities of digital research data, offering new insights and opportunities for improved understanding. Text and data mining is emerging as a powerful tool for harnessing the power of structured and unstructured content and data, by analysing them at multiple levels and in several dimensions to discover hidden and new knowledge. However, text mining solutions are not easy to discover and use, nor are they easily combinable by end users. OpenMinTeD aspires to enable the creation of an infrastructure that fosters and facilitates the use of text mining technologies in the scientific publications world, builds on existing text mining tools and platforms, and renders them discoverable and interoperablethrough appropriate registriesand a standards-based interoperability layer, respectively. It supports training of text mining users and developers alike and demonstrates the merits of the approach through several use cases identified by scholars and experts from different scientific areas, ranging from generic scholarly communication to literaturerelated tolife sciences, food and agriculture, and social sciences and humanities. Through its infrastructural activities, OpenMinTeD’s vision is tomake operational a virtuous cycle in which a) primary content is accessed through standardised interfaces and access rules b) by well-documented and easily discoverable text mining services that process, analyse, and annotate text c) to identify patterns and extract new meaningful actionable knowledge, which will be used d) for structuring, indexing, and searching content and, in tandem, e) acting as new knowledge useful to draw new relations between content items and firing a new mining cycle. To achieve its goals, OpenMinTeD brings together different stakeholders, content providers and scientific communities, text mining and infrastructure builders, legal experts, data and computing centres, industrial players, and SMEs.

 Deliverables

List of deliverables.
Interoperability Landscaping Report Documents, reports 2019-05-31 14:57:44
Collaboration and Liaison Plan Documents, reports 2019-05-31 14:57:34
Support kit for TDM topics (M18) Other 2019-05-31 14:56:47
Interoperability Standards and Specifications Report (20) Documents, reports 2019-05-31 14:57:11
Community Driven Evaluation Report Documents, reports 2019-05-31 14:57:36
Infrastructure data and service providers registration (36) Other 2019-05-31 14:57:31
Lessons Learnt - Whitepaper from OpenMinTeD experiences Documents, reports 2019-05-31 14:57:29
Dissemination plan and roadmap (living document) Other 2019-05-31 14:57:25
Infrastructure Operation Report (30) Other 2019-05-31 14:57:21
Platform Architectural Specification Documents, reports 2019-05-31 14:57:14
Open Calls Programme Implementation Report Documents, reports 2019-05-31 14:57:44
On-Line Support Knowledge Base Other 2019-05-31 14:57:34
Final Support and Training Activities Report Documents, reports 2019-05-31 14:57:37
Infrastructure Operation Report Other 2019-05-31 14:57:23
Infrastructure data and service providers registration Other 2019-05-31 14:57:27
Interoperability Standards and Specifications Report Documents, reports 2019-05-31 14:57:16
OpenMinTeD functional specifications Documents, reports 2019-05-31 14:57:08
Community Requirement Analysis Report Documents, reports 2019-05-31 14:57:00
Support kit for TDM topics (M10) Other 2019-05-31 14:56:45
Infrastructure data and service providers registration (30) Other 2019-05-31 14:57:31
Platform Interoperability Guidelines (M28) Documents, reports 2019-05-31 14:57:18
Platform Architectural Specification (M20) Documents, reports 2019-05-31 14:57:12
Platform UI Specification (20) Documents, reports 2019-05-31 14:57:12
Quality Assurance & Risk Management Plan Documents, reports 2019-05-31 14:57:06
Application Software Documentation – updated periodically Other 2019-05-31 14:57:30
Testing methodology Other 2019-05-31 14:57:39
Platform UI Specification Documents, reports 2019-05-31 14:57:15
Platform services distributi on specification (M26) Documents, reports 2019-05-31 14:57:26
Application Software Release Report Other 2019-05-31 14:57:34
Platform Software Documentation Other 2019-05-31 14:57:29
Interoperability Standards and Specifications Report (26) Documents, reports 2019-05-31 14:57:11
Community Driven Applications Design Report Documents, reports 2019-05-31 14:57:26
Open Calls Specifications Documents, reports 2019-05-31 14:57:21
Platform Interoperability Guidelines Documents, reports 2019-05-31 14:57:11
Platform release plan Documents, reports 2019-05-31 14:57:37
Infrastructure Operation Report (36) Other 2019-05-31 14:57:26
Requirements methodology Documents, reports 2019-05-31 14:57:11
Community Evaluation Scenarios Definition Report Documents, reports 2019-05-31 14:57:11
Community Driven Evaluation Methodology (indicators) Documents, reports 2019-05-31 14:57:22
Community Driven Applications Design Report (26) Documents, reports 2019-05-31 14:57:30
Platform services distribution specification Documents, reports 2019-05-31 14:57:14
First Support and Training Activities Report Documents, reports 2019-05-31 14:57:14
Infrastructure Operation Report (M24) Other 2019-05-31 14:57:27
Software Release Report – continuously updated Other 2019-05-31 14:57:27
Platform UI Specification (26) Documents, reports 2019-05-31 14:57:18
Platform Architectural Specification (26) Documents, reports 2019-05-31 14:57:09
Support kit for TDM topics (24) Other 2019-05-31 14:56:50
Support kit for TDM topics (30) Other 2019-05-31 14:56:55
Infrastructure data and service providers registration (24) Other 2019-05-31 14:57:26

Take a look to the deliverables list in detail:  detailed list of OpenMinTeD deliverables.

 Publications

year authors and title journal last update
List of publications.
2017 Charalampous, Aristotelis; Knoth, Petr
Classifying document types to enhance search and recommendations in digital libraries
published pages: , ISSN: , DOI: 10.1007/978-3-319-67008-9_15
21st International Conference on Theory and Practise of Digital Libraries (TPDL) 2 2019-06-11
2017 Nédellec C., Bossy R., Chaix E., Deléger L.
Text mining and ontologies: new approaches to knowledge discovery of microbial diversity
published pages: 221--227, ISSN: , DOI:
Proceedings of the 4th International Microbial Diversity Conference 2019-06-11
2016 Ioannis Korkontzelos, Azadeh Nikfarjam, Matthew Shardlow, Abeed Sarker, Sophia Ananiadou, Graciela H. Gonzalez
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
published pages: 148-158, ISSN: 1532-0464, DOI: 10.1016/j.jbi.2016.06.007
Journal of Biomedical Informatics 62 2019-06-11
2018 Estelle Chaix, Louise Deléger, Robert Bossy, Claire Nédellec
Text mining tools for extracting information about microbial biodiversity in food
published pages: , ISSN: 0740-0020, DOI: 10.1016/j.fm.2018.04.011
Food Microbiology 2019-06-11
2016 Margoni, Thomas; Dore, Giulia
Why We Need a Text and Data Mining Exception (But it is Not Enough)
published pages: 57--59, ISSN: , DOI: 10.5281/zenodo.248048
Proceedings of the Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP 2016) at LREC 2016 May 23rd 2016 2019-06-11
2016 Stelios Piperidis, Maria Gavrilidou, Penny Labropoulou
Language infrastructures in support of text mining
published pages: , ISSN: , DOI: 10.5281/zenodo.1475164
5th International workshop On Mining Scientific Publications (WOSP 2016) 22-23 June 2016 2019-06-11
2016 Piotr Przybyła, Matthew Shardlow, Sophie Aubin, Robert Bossy, Richard Eckart de Castilho, Stelios Piperidis, John McNaught, Sophia Ananiadou
Text mining resources for the life sciences
published pages: , ISSN: 1758-0463, DOI:
Database 2016 2019-06-11
2016 Richard Eckart de Castilho
Interoperability = f(community, division of labour)
published pages: 24--28, ISSN: , DOI: 10.5281/zenodo.161848
Proceedings of the Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP 2016) at LREC 2016 May 23rd 2016 2019-06-11
2016 Richard Eckart de Castilho
Automatic Analysis of Flaws in Pre-Trained NLP Models
published pages: 19--27, ISSN: , DOI:
Proceedings of the Third International Workshop on Worldwide Language Service Infrastructure and Second Workshop on Open Infrastructures and Analysis Frameworks for Human Language Technologies 12 Dec 2016 2019-06-11
2016 Wim Peters
Tackling Resource Interoperability: Principles, Strategies and Models
published pages: 34-37, ISSN: , DOI:
Proceedings of the Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP 2016) at LREC 2016 May 23rd 2016 2019-06-11
2016 Mouhamadou Ba; Robert Bossy
Interoperability of corpus processing work-flow engines: the case of AlvisNLP/ML in OpenMinTeD
published pages: 15--18, ISSN: , DOI: 10.5281/zenodo.200370
Proceedings of the Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP 2016) at LREC 2016 May 23rd 2016 2019-06-11
65535 Thomas Margoni
Intellectual Property and Text and Data Mining
published pages: Sec. 32, ISSN: , DOI:
HANDBOOK ON INTELLECTUAL PROPERTY RESEARCH 2018 2019-06-11
2018 Thomas Margoni Martin Kretschmer
The Text and Data Mining exception in the Proposal for a Directive on Copyright in the Digital Single Market: Why it is not what EU copyright law needs
published pages: forthcoming, ISSN: , DOI:
EPIP 2018 Yearly 2019-06-11
2016 Knoth, Petr; Pontika, Nancy
Aggregating Research Papers from Publishers’ Systems to Support Text and Data Mining: Deliberate Lack of Interoperability or Not?
published pages: 1-4, ISSN: , DOI: 10.5281/zenodo.194788
Proceedings of the Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP 2016) at LREC 2016 May 23rd 2016 2019-06-11
2017 Steffen Eger, Erik-Lân Do Dinh, Ilia Kuznetsov, Masoud Kiaeeha, Iryna Gurevych
EELECTION at SemEval-2017 Task 10: Ensemble of nEural Learners for kEyphrase ClassificaTION
published pages: 942--946, ISSN: , DOI:
Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017) August 3rd 2017 2019-06-11
2016 Estelle Chaix, Bertrand Dubreucq, Abdelhak Fatihi, Dialekti Valsamou, Robert Bossy, Mouhamadou Ba, Louise Delėger, Pierre Zweigenbaum, Philippe Bessières, Loïc Lepiniec, Claire Nėdellec
Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016.
published pages: 1-11, ISSN: , DOI: 10.18653/v1/W16-3001
Proceedings of the 4th BioNLP Shared Task Workshop 2019-06-11
2016 de Castilho, R. E., Ananiadou, S., Margoni, T., Peters, W. and Piperidis, S. (Eds.) (2016) Cross-Platform Text Mining and Natural Language Processing Interoperability
Cross-Platform Text Mining and Natural Language Processing Interoperability - Proceedings of the LREC2016 conference
published pages: 1 - 72, ISSN: , DOI:
Proceedings of the LREC2016 conference 2016 2019-06-11
2017 Estelle Chaix, Sophie Aubin, Louise Deléger, and Claire Nédellec
Text mining needs of the food microbiology research community
published pages: , ISSN: , DOI:
2017 EFITA WCCA Congress 2019-06-11
2018 Matthew Shardlow, Meizhi Ju, Maolin Li, Christian O\'Reilly, Elisabetta Iavarone, John McNaught, Sophia Ananiadou
A Text Mining Pipeline Using Active and Deep Learning for Curating Information in Computational Neuroscience
published pages: , ISSN: 1539-2791, DOI: 10.1007/s12021-018-9404-y
Neuroinformatics 2019-06-11
2016 Labropoulou, Penny, Piperidis, Stelios, & Margoni, Thomas
Legal Interoperability Issues in the Framework of the OpenMinTeD Project:A Methodological Overview
published pages: , ISSN: , DOI: 10.5281/zenodo.182497
Workshop on Cross-Platform Text Mining and Natural Language Processing Interoperability (INTEROP2016) 23 May 2016 2019-06-11
2017 Pride, David; Knoth, Petr
Incidental or influential? – A decade of using text-mining for citation function classification.
published pages: , ISSN: , DOI:
16th International Society of Scientometrics and Informetrics Conference 2019-06-11
2017 Pérez-Pérez, Martin; Rabal, Obdulia; Pérez-Rodríguez, Gael; Vazquez, Miguel; Fdez-Riverola, Florentino; Oyarzabal, Julen; Valencia, Alfonso; Lourenço, Anália; Krallinger, Martin
Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks
published pages: , ISSN: , DOI:
Proceedings of the BioCreative V.5 Challenge Evaluation Workshop 7 2019-04-18
2017 Pérez-Pérez, Martin; Pérez-Rodríguez, Gael; Blanco-Míguez, Aitor; Fdez-Riverola, Florentino; Valencia, Alfonso; Krallinger, Martin; Lourenço, Anália
Benchmarking biomedical text mining web servers at BioCreative V.5: the technical Interoperability and Performance of annotation Servers - TIPS track
published pages: , ISSN: , DOI:
Proceedings of the BioCreative V.5 Challenge Evaluation Workshop 8 2019-04-18
2018 Androniki Pavlidou
OpenMinTeD Executive Summary
published pages: , ISSN: , DOI: 10.5281/zenodo.1404146
1 2019-04-18
2018 Edwin D. Simpson, Iryna Gurevych
Finding Convincing Arguments Using Scalable Bayesian Preference Learning
published pages: 357--371, ISSN: 2307-387X, DOI:
Transactions of the Association for Computational Linguistics 6 2019-04-18
2018 Matthew Shardlow, Riza Batista-Navarro, Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou
Identification of research hypotheses and new knowledge from scientific literature
published pages: , ISSN: 1472-6947, DOI: 10.1186/s12911-018-0639-1
BMC Medical Informatics and Decision Making 18/1 2019-04-18
2017 Martin Krallinger, Martin Pérez-Pérez, Gael Pérez-Rodríguez, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Salvador Capella-Gutierrez, Anália Lourenço, Alfonso Valencia
The BioCreative V.5 evaluation workshop: tasks, organization, sessions and topics
published pages: , ISSN: , DOI:
Proceedings of the BioCreative V.5 Challenge Evaluation Workshop 2019-04-18
2017 Andres Cañada, Salvador Capella-Gutierrez, Obdulia Rabal, Julen Oyarzabal, Alfonso Valencia, Martin Krallinger
LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes
published pages: W484-W489, ISSN: 0305-1048, DOI: 10.1093/nar/gkx462
Nucleic Acids Research 45/W1 2019-04-18
2017 Martin Krallinger, Obdulia Rabal, Anália Lourenço, Julen Oyarzabal, Alfonso Valencia
Information Retrieval and Text Mining Technologies for Chemistry
published pages: 7673-7761, ISSN: 0009-2665, DOI: 10.1021/acs.chemrev.6b00851
Chemical Reviews 117/12 2019-04-18

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