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CoBCoM SIGNED

Computational Brain Connectivity Mapping

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EC-Contrib. €

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Project "CoBCoM" data sheet

The following table provides information about the project.

Coordinator
INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE 

Organization address
address: DOMAINE DE VOLUCEAU ROCQUENCOURT
city: LE CHESNAY CEDEX
postcode: 78153
website: www.inria.fr

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country France [FR]
 Project website https://project.inria.fr/cobcom/
 Total cost 2˙469˙122 €
 EC max contribution 2˙469˙122 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2015-AdG
 Funding Scheme ERC-ADG
 Starting year 2016
 Duration (year-month-day) from 2016-09-01   to  2021-08-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE FR (LE CHESNAY CEDEX) coordinator 2˙469˙122.00

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 Project objective

One third of the burden of all the diseases in Europe is due to problems caused by diseases affecting brain. Although exceptional progress has been obtained for exploring it during the past decades, the brain is still terra-incognita and calls for specic research efforts to better understand its architecture and functioning.

CoBCoM is our response to this great challenge of modern science with the overall goal to develop a joint Dynamical Structural-Functional Brain Connectivity Network (DSF-BCN) solidly grounded on advanced and integrated methods for diffusion Magnetic Resonance Imaging (dMRI) and Electro & Magneto-Encephalography (EEG & MEG).

To take up this grand challenge and achieve new frontiers for brain connectivity mapping, we will develop a new generation of computational models and methods for identifying and characterizing the structural and functional connectivities that will be at the heart of the DSF-BCN. Our strategy is to break with the tradition to incrementally and separately contributing to structure or function and develop a global approach involving strong interactions between structural and functional connectivities. To solve the limited view of the brain provided just by one imaging modality, our models will be developed under a rigorous computational framework integrating complementary non invasive imaging modalities: dMRI, EEG and MEG.

CoBCoM will push far forward the state-of-the-art in these modalities, developing innovative models and ground-breaking processing tools to provide in-fine a joint DSF-BCN solidly grounded on a detailed mapping of the brain connectivity, both in space and time.

Capitalizing on the strengths of dMRI, MEG & EEG methodologies and building on the bio- physical and mathematical foundations of our new generation of computational models, CoBCoM will be applied to high-impact diseases, and its ground-breaking computational nature and added clinical value will open new perspectives in neuroimaging.

 Publications

year authors and title journal last update
List of publications.
2019 Alimi Abib, Deslauriers-Gauthier Samuel, Deriche Rachid
Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging
published pages: , ISSN: , DOI:
ISMRM 2019 - International Society for Magnetic Resonance in Medicine, May 2019 2019 ISMRM 2019-09-13
2017 Guillermo Gallardo, Nathalie Thérèse Hélène Gayraud, Maureen Clerc, Demian Wassermann
Matching parcellations using Optimal Transport: a proof of concept
published pages: , ISSN: , DOI:
Computational Brain Connectivity Mapping – Winter School Workshop 2017, Nov 2017, Juan-les-Pins, France. 2017 CoBCoM 2019-09-13
2018 Kostiantyn Maksymenko, Maureen Clerc, Théodore Papadopoulo
Data-driven cortical clustering to provide a family of plausible solutions to the M/EEG inverse problem
published pages: , ISSN: , DOI:
BIOMAG 2018, Aug 2018, Philadelphia, United States. 2018 BIOMAG 2019-09-13
2018 Guillermo Gallardo, Nathalie Gayraud, Rachid Deriche, Maureen Clerc, Samuel Deslauriers-Gauthier, Demian Wassermann
Solving the Cross-Subject Parcel Matching Problem using Optimal Transport
published pages: , ISSN: , DOI:
International Conference on Medical Image Computing and Computer-Assisted Intervention 2018, 2018 MICCAI 2019-09-13
2019 Zucchelli Mauro, Parker​ Drew, Deslauriers-Gauthier Samuel, Kim Junghoon, Verma​ Ragini, Deriche​ Rachid
A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants
published pages: , ISSN: , DOI:
ISMRM 2019 - 27th Annual Meeting International Society for Magnetic Resonance in Medicine 2019 ISMRM 2019-09-13
2017 Alimi Abib, Pizzolato Marco, Fick Rutger HJ., Deriche, Rachid
Solving the inclination sign ambiguity in three dimensional polarized light imaging with a pde-based method
published pages: , ISSN: , DOI:
2017 IEEE 14th International Symposium on Biomedical Imaging 2017 ISBI 2019-06-13
2019 Frigo Matteo, Deslauriers-Gauthier Samuel, Parker Drew, Aziz Abdol, Ismail Ould, Kim John, Verma Ragini, Deriche Rachid
Effects of tractography filtering on the topology and interpretability of connectomes
published pages: , ISSN: , DOI:
The Organization for Human Brain Mapping (OHBM) 2019 OHBM 2019-06-13
2018 Paul Görlach, Evelyne Hubert, Théo Papadopoulo
Rational Invariants of Even Ternary Forms Under the Orthogonal Group
published pages: 1-47, ISSN: 1615-3375, DOI: 10.1007/s10208-018-9404-1
Foundations of Computational Mathematics 2019-06-13
2018 Matteo Frigo, Guillermo Gallardo, Isa Constantini, Alessandro Daducci, Demian Wassermann, Rachid Deriche, Samuel Deslauriers-Gauthier
Reducing false positive connection in tractograms using joint structure-function filtering
published pages: , ISSN: , DOI:
Organization for Human Brain Mapping 2018 OHBM 2019-06-13
2018 Rutger H.J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Non-parametric graphnet-regularized representation of dMRI in space and time
published pages: 37-53, ISSN: 1361-8415, DOI: 10.1016/j.media.2017.09.002
Medical Image Analysis 43 2019-06-13
2017 Gabriel Girard, Alessandro Daducci, Laurent Petit, Jean-Philippe Thiran, Kevin Whittingstall, Rachid Deriche, Demian Wassermann, Maxime Descoteaux
AxTract: Toward microstructure informed tractography
published pages: 5485-5500, ISSN: 1065-9471, DOI: 10.1002/hbm.23741
Human Brain Mapping 38/11 2019-06-13
2017 Alimi Abib O. Y., Deslauriers-Gauthier Samuel, Deriche Rachid
Regularizing the ODF estimate with the Laplace-Beltrami operator in 3D Polarized Light Imaging
published pages: , ISSN: , DOI:
CoBCoM 2017 - Computational Brain Connectivity Mapping Winter School Workshop 2017 CoBCoM 2019-06-13
2017 Guillermo Gallardo, Rachid Deriche, Demian Wassermann
A Novel Parcellation of Human Cerebral Cortex based on Extrinsic Connectivity
published pages: , ISSN: , DOI:
Organization for Human Brain Mapping 2017 OHBM 2019-06-13
2017 Guillermo Gallardo, William Wells, Rachid Deriche, Demian Wassermann
Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach
published pages: , ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.01.070
NeuroImage Available online 1 February 201 2019-06-13
2019 Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Philippe Ciuciu, Rachid Deriche, Demian Wassermann
Reducing the number of samples in spatiotemporal dMRI acquisition design
published pages: 3218-3233, ISSN: 0740-3194, DOI: 10.1002/mrm.27601
Magnetic Resonance in Medicine 81/5 2019-06-13
2016 Rachid Deriche
Computational brain connectivity mapping: A core health and scientific challenge
published pages: 122-126, ISSN: 1361-8415, DOI: 10.1016/j.media.2016.06.003
Medical Image Analysis 33 2019-06-13
2017 Uran Ferizi, Benoit Scherrer, Torben Schneider, Mohammad Alipoor, Odin Eufracio, Rutger H.J. Fick, Rachid Deriche, Markus Nilsson, Ana K. Loya-Olivas, Mariano Rivera, Dirk H.J. Poot, Alonso Ramirez-Manzanares, Jose L. Marroquin, Ariel Rokem, Christian Pötter, Robert F. Dougherty, Ken Sakaie, Claudia Wheeler-Kingshott, Simon K. Warfield, Thomas Witzel, Lawrence L. Wald, José G. Raya, Daniel C. Alexander
Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison
published pages: e3734, ISSN: 0952-3480, DOI: 10.1002/nbm.3734
NMR in Biomedicine 30/9 2019-06-13
2018 Rutger Fick, Demian Wassermann, Rachid Deriche
Mipy: An Open-Source Framework to improve reproducibility in BrainMicrostructure Imaging
published pages: , ISSN: , DOI:
Organization for Human Brain Mapping 2018 OHBM 2019-06-13
2019 Thinhinane Megherbi, Gabriel Girard, Aurobrata Ghosh, Fatima Oulebsir-Boumghar, Rachid Deriche
Fiber orientation distribution function from non-negative sparse recovery with quantitative analysis of local fiber orientations and tractography using DW-MRI datasets
published pages: 218-234, ISSN: 0730-725X, DOI: 10.1016/j.mri.2018.10.003
Magnetic Resonance Imaging 57 2019-06-13
2017 Tharindu Ganepola, Zoltan Nagy, Aurobrata Ghosh, Theodore Papadopoulo, Daniel C. Alexander, Martin I. Sereno
Using diffusion MRI to discriminate areas of cortical grey matter
published pages: , ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.12.046
NeuroImage 17 2019-06-13
2017 Rutger Fick
Advanced dMRI signal modeling for tissue microstructure characterization
published pages: , ISSN: , DOI:
Ph.D - Université Côte d\'Azur 1 2019-06-13
2017 Sebastian Hitziger, Maureen Clerc, Sandrine Saillet, Christian Benar, Theodore Papadopoulo
Adaptive Waveform Learning: A Framework for Modeling Variability in Neurophysiological Signals
published pages: 4324-4338, ISSN: 1053-587X, DOI: 10.1109/TSP.2017.2698415
IEEE Transactions on Signal Processing 65/16 2019-06-13
2018 Alimi Abib, Fick Rutger, Wassermann Demian, Deriche Rachid
Dmipy, a Diffusion Microstructure Imaging toolbox in Python to improve research reproducibility
published pages: , ISSN: , DOI:
Computational Diffusion MRI 2018 - MICCAI Workshop 14 2019-04-18
2018 Alimi Abib, Petiet Alexandra , Santin Mathieu, Philippe Anne-Charlotte, Leh{\'e}ricy St{\'e}phane. Deriche Rachid, Wassermann Demian
Towards the assessment of myelination using time-dependent diffusion MRI indices}
published pages: , ISSN: , DOI:
ISMRM 2018 - 26th International Society for Magnetic Resonance in Medicine 2018 ISMRM 2019-04-18
2019 Abib Alimi, Samuel Deslauriers-Gauthier, F. Matuschke, D. Schmitz, M. Axer, Rachid Deriche
Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment
published pages: , ISSN: , DOI:
ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging 2019 ISBI 2019-04-18
2018 Matteo Frigo, Isa Costantini, Rachid Deriche, Samuel Deslauriers-Gauthier
Resolving the crossing/kissing fiber ambiguity using Functionally Informed COMMIT
published pages: , ISSN: , DOI:
Computational Diffusion MRI 2018 - MICCAI Workshop 14 2019-04-18
2019 Abib Alimi, Samuel Deslauriers-Gauthier, Rachid Deriche
Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging
published pages: , ISSN: , DOI:
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine} 2019 ISMRM 2019-04-18
2017 Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Spatio-Temporal dMRI Acquisition Design: Reducing the Number of $qtau$ Samples Through a Relaxed Probabilistic Model
published pages: , ISSN: , DOI:
Computational Diffusion MRI, MICCAI Workshop 2017 2017 CDMRI 2019-04-16
2019 Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stéphane Lehéricy, Rachid Deriche, Demian Wassermann
Coarse-Grained Spatiotemporal Acquisition Design for Diffusion MRI
published pages: , ISSN: , DOI:
ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging 2019 ISBI 2019-04-16
2016 Brahim Belaoucha , Théodore Papadopoulo
Iterative two-stage approach to estimate sources and their interactions
published pages: , ISSN: , DOI:
20th International Conference on Biomagnetism (BIOMAG2016), 2016 BIOMAG 2019-04-16
2018 Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier, Rachid Deriche
L1-Norm Regularized Deconvolution of Functional MRI BOLD Signal
published pages: , ISSN: , DOI:
C@UCA 2019-04-16
2017 Guillermo Gallardo , Rachid Deriche , Demian Wassermann
A Novel Atlas of Human Cerebral Cortex based on Extrinsic Connectivity
published pages: , ISSN: , DOI:
OHBM 2017 - Organization for Human Brain Mapping 2017 Annual Meeting 2017 OHBM 2019-04-18
2019 Mauro Zucchelli, Drew Parker​, Samuel Deslauriers-Gauthier, Junghoon Joh Kim, J Ragini Verma, Rachid Deriche
A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants
published pages: , ISSN: , DOI:
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine 2019 ISMRM 2019-04-16
2018 Samuel Deslauriers-Gauthier, Drew Parker, François Rheault, Rachid Deriche, Steven Brem, Maxime Descoteaux, and Ragini Verma
Edema-informed anatomically constrained particle filter tractography
published pages: 375-382, ISSN: , DOI:
MICCAI 2018 - 21st International Conference, Medical Image Computing and Computer Assisted Intervention LNCS 11072 2019-04-18
2016 Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehericy ,, Rachid Deriche , Demian Wassermann
Multi-Spherical MRI: Breaking the Boundaries of Diffusion Time
published pages: , ISSN: , DOI:
ISMRM Workshop on: Breaking the Barriers of Diffusion MRI 2016 ISMRM 2019-04-16
2018 Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
A Closed-Form Solution of Rotation Invariant Spherical Harmonic Features in Diffusion MRI
published pages: , ISSN: , DOI:
Computational Diffusion MRI - MICCAI Workshop 2018 14 2019-04-16
2018 Patryk Filipiak , Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehéricy , Rachid Deriche , Demian Wassermann
Spatio-Temporal dMRI Acquisition Design: Reducing the Number of Samples
published pages: , ISSN: , DOI:
ISMRM 2018: 26h International Society for Magnetic Resonance in Medicine 2018 ISMRM 2019-04-16
2019 Samuel Deslauriers-Gauthier, Rachid Deriche
Estimation of Axon Conduction Delay, Conduction Speed, and Diameter from Information Flow using Diffusion MRI and MEG
published pages: , ISSN: , DOI:
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition 2019 ISMRM 2019-04-18
2018 Kostiantyn Maksymenko, Maureen Clerc, Th{\'e}odore Papadopoulo
Fast Approximation of EEG Forward Problem and Application to Tissue Conductivity Estimation
published pages: , ISSN: , DOI:
2019-04-16
2018 Kostiantyn Maksymenko, Maureen Clerc, Th{\'e}odore Papadopoulo
Data-driven cortical clustering to provide a family of plausible solutions to M/EEG inverse problem
published pages: , ISSN: , DOI:
iTWIST: international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques 2018 ITWIST 2019-04-16
2017 Kostiantyn Maksymenko, Th{\'e}odore Papadopoulo, Samuel Deslauriers-Gauthier
White matter fiber bundles as a source model in the MEG inverse problem
published pages: , ISSN: , DOI:
COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop 2017 COBCOM 2019-04-18
2018 Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier , Rachid Deriche
fMRI Deconvolution via Temporal Regularization using a LASSO model and the LARS algorithm
published pages: , ISSN: , DOI:
EMBC\'18 - 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) 2018 EMBC 2019-04-16
2017 Isa Costantini, Patryk Filipiak, Kostiantyn Maksymenko, Rachid Deriche, Samuel Deslauriers-Gauthier
Deconvolution of fMRI BOLD signal in time-domain using an exponential operator and Lasso optimization
published pages: , ISSN: , DOI:
COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop 2017 COBCOM 2019-04-16
2019 Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche
Novel 4-D Algorithm for Functional MRI Image Regularization using Partial Differential Equations
published pages: , ISSN: , DOI:
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition 2019 ISMRM 2019-04-16
2018 Guillermo Gallardo , Sylvain Bouix, Demian Wassermann
Diffusion Driven Label Fusion for White Matter Multi-Atlas Segmentation
published pages: , ISSN: , DOI:
OHBM 2018 - Organization for Human Brain Mapping, 2018 OHBM 2019-04-16
2017 Rutger H. J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Multi-Spherical Diffusion MRI: An in-vivo Test- Retest Study of Time-Dependent q-space Indices
published pages: , ISSN: , DOI:
ISMRM 2017: 25th International Society for Magnetic Resonance in Medicine 2017 ISMRM 2019-04-16
2019 Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche
Deconvolution of fMRI Data using a Paradigm Free Iterative Approach based on Partial Differential Equations
published pages: , ISSN: , DOI:
OHBM 2019 - Organization for Human Brain Mapping 2019 Annual Meeting 2019 OHBM 2019-04-16
2017 Guillermo Gallardo, Demian Wassermann, Rachid Deriche, Maxime Descoteaux, Samuel Deslauriers-Gauthier
Information Flow in the White Matter During a Motor Task: A Structural Connectivity Driven Approach
published pages: , ISSN: , DOI:
Organization for Human Brain Mapping \' 2017 OHBM 2019-04-16

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