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ImageInLife SIGNED

Training European Experts in Multilevel Bioimaging, Analysis and Modelling of Vertebrate Development and Disease

Total Cost €

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EC-Contrib. €

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Partnership

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 ImageInLife project word cloud

Explore the words cloud of the ImageInLife project. It provides you a very rough idea of what is the project "ImageInLife" about.

academia    experts    software    members    outreach    monthly    sprang    reaching    frame    subcellular    cell    designs    implementing    training    behaviours    pathologies    scientific    preparing    keen    model    trained    analysing    mathematical    chain    interdisciplinary    scientists    sensors    technological    complete    full    reporters    create    industry    models    organism    original    network    computational    medical    image    competitive    setting    educate    embryos    companies    videolink    optimal    organisation    organisms    tools    lego    healthy    tuning    balance    classroom    data    instrumentation    fine    conferences    cellular    types    big    bottlenecks    zebrafish    screen    microscopy    instruments    digital    vertebrate    moocs    biological    pathological    intersectoral    feedback    serious    preparation    track    drugs    esrs    rodent    experimental    images    imaging    imagers    universities    eg    resolution    actuators    physical    innovations    master    events    extract    living    games    processed    generation    loop    chemicals   

Project "ImageInLife" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITE DE MONTPELLIER 

Organization address
address: 163 RUE AUGUSTE BROUSSONNET
city: MONTPELLIER
postcode: 34090
website: www.umontpellier.fr

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country France [FR]
 Project website http://imageinlife.eu/
 Total cost 3˙562˙028 €
 EC max contribution 3˙562˙028 € (100%)
 Programme 1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
 Code Call H2020-MSCA-ITN-2016
 Funding Scheme MSCA-ITN-ETN
 Starting year 2017
 Duration (year-month-day) from 2017-01-01   to  2020-12-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITE DE MONTPELLIER FR (MONTPELLIER) coordinator 262˙875.00
2    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 606˙074.00
3    UNIVERSITEIT LEIDEN NL (LEIDEN) participant 510˙748.00
4    SLOVENSKA TECHNICKA UNIVERZITA V BRATISLAVE SK (BRATISLAVA) participant 462˙157.00
5    THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE UK (CAMBRIDGE) participant 273˙287.00
6    THE MANCHESTER METROPOLITAN UNIVERSITY UK (MANCHESTER) participant 273˙287.00
7    INSTITUT PASTEUR FR (PARIS CEDEX 15) participant 262˙875.00
8    DITABIS DIGITAL BIOMEDICAL IMAGING SYSTEMS AG DE (PFORZHEIM) participant 249˙216.00
9    FUNDACIO INSTITUT DE CIENCIES FOTONIQUES ES (Castelldefels) participant 247˙872.00
10    TATRAMED SOFTWARE SRO SK (BRATISLAVA) participant 231˙078.00
11    PHASEVIEW FR (VERRIERES LE BUISSON) participant 182˙552.00
12    ACQUIFER AG DE (PFORZHEIM) participant 0.00
13    4D - NATURE IMAGING CONSULTING SL ES (MADRID) partner 0.00
14    CARL ZEISS NTS GMBH DE (OBERKOCHEN) partner 0.00
15    COMMUNAUTE D UNIVERSITES ET ETABLISSEMENTS UNIVERSITE PARIS-SACLAY FR (SAINT AUBIN) partner 0.00
16    Union Biometrica BVBA BE (Geel) partner 0.00
17    UNIVERSITATSKLINIKUM HEIDELBERG DE (HEIDELBERG) partner 0.00
18    UNIVERSITE PIERRE ET MARIE CURIE - PARIS 6 FR (PARIS) partner 0.00

Map

 Project objective

This proposal sprang from European scientists in both academia and industry who identified a common challenge: setting up a training frame to educate the next generation of imagers in complex biological systems (healthy & pathological), so they are able to master all major aspects of this competitive field and bring important innovations to universities and companies. The long-term goal of any initiative to image biological processes is reaching cellular or subcellular resolution in a complete organism. This is now possible using vertebrate embryos as models and the most recent technological advances as tools. ESRs will be trained by addressing the following scientific bottlenecks and challenges: -Preparing vertebrate embryos (rodent & zebrafish) for optimal imaging -Fine-tuning sensors, reporters and actuators to track cell types, cellular processes and behaviours in living organisms -Developing and implementing new imaging instruments -Analysing complex sets of big-data images to extract relevant information -Using processed images to design computational and mathematical models of development and pathologies -Comparing these models with experimental data and create a feedback loop improving the whole work chain from sample preparation to instrumentation and analysis. This interdisciplinary training is based on an intersectoral organisation of the consortium with partners from academia and companies that need these future experts to develop new instruments, screen drugs and chemicals in living systems and develop software to analyse and model medical images. The full training programme is based on an optimal balance between training through research and many network-wide training events, including conferences with physical presence, digital conferences and monthly videolink events. Consortium members are keen to implement both classical and original outreach activities (eg MOOCs, serious games, Lego designs) to bring state-of-the-art microscopy to the classroom.

 Deliverables

List of deliverables.
Midterm report Documents, reports 2020-01-29 13:53:37
Wikipedia article Websites, patent fillings, videos etc. 2020-01-29 13:53:37
Report on Congress Presentations and Scientific Publications I Documents, reports 2020-01-29 13:53:37
Design of image processing and analysis methods Documents, reports 2020-01-29 13:53:37
Tissue geometry & physics Documents, reports 2020-01-29 13:53:37
Infection protocols Documents, reports 2020-01-29 13:53:37
Incubation chambers Demonstrators, pilots, prototypes 2020-01-29 13:53:37
Cell biomechanics Documents, reports 2020-01-29 13:53:37
Data Management Plan Open Research Data Pilot 2020-01-29 13:53:36
Consortium agreement Documents, reports 2020-01-29 13:53:36
Brochure, Website & Advertising Websites, patent fillings, videos etc. 2020-01-29 13:53:36

Take a look to the deliverables list in detail:  detailed list of ImageInLife deliverables.

 Publications

year authors and title journal last update
List of publications.
2020 Laurent SV Thomas and Jochen Gehrig
ImageJ/Fiji ROI 1-click tools for rapid manual image annotations and measurements
published pages: , ISSN: 2578-9430, DOI: 10.17912/micropub.biology.000215
microPublication Biology 2020-03-05
2019 Ghizlane Maarifi, Nikaïa Smith, Sarah Maillet, Olivier Moncorgé, Célia Chamontin, Joanne Edouard, Frédéric Sohm, Fabien P. Blanchet, Jean-Philippe Herbeuval, Georges Lutfalla, Jean-Pierre Levraud, Nathalie J. Arhel, Sébastien Nisole
TRIM8 is required for virus-induced IFN response in human plasmacytoid dendritic cells
published pages: eaax3511, ISSN: 2375-2548, DOI: 10.1126/sciadv.aax3511
Science Advances 5/11 2020-03-05
2020 Laurent S. V. Thomas, Jochen Gehrig
Multi-template matching: a versatile tool for object-localization in microscopy images
published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-020-3363-7
BMC Bioinformatics 21/1 2020-03-05
2019 Jean-Pierre Levraud, Luc Jouneau, Valérie Briolat, Valerio Laghi, Pierre Boudinot
IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity
published pages: 3361-3373, ISSN: 0022-1767, DOI: 10.4049/jimmunol.1900804
The Journal of Immunology 203/12 2020-03-05
2019 Seol Ah Park, Tamara Sipka, Zuzana Kriva, Martin Ambroz, Michal Kollar, Balazs Kosa, Mai Nguyen-Chi, Georges Lutfalla, Karol Mikula
MACROPHAGE IMAGE SEGMENTATION BY THRESHOLDING AND SUBJECTIVE SURFACE METHOD
published pages: , ISSN: 1210-3195, DOI:
Tatra Mountains Mathematical Publications 2020-01-29
2019 Laurent S. V. Thomas, Jochen Gehrig
Multi-Template Matching: a versatile tool for object-localization in microscopy images
published pages: , ISSN: , DOI: 10.1101/619338
Biorxiv 2020-01-29
2019 Neophytos Christodoulou, Antonia Weberling, Douglas Strathdee, Kurt I. Anderson, Paul Timpson, Magdalena Zernicka-Goetz
Morphogenesis of extra-embryonic tissues directs the remodelling of the mouse embryo at implantation
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-019-11482-5
Nature Communications 10/1 2020-01-29
2018 Quang Tien Phan, Tamara Sipka, Catherine Gonzalez, Jean-Pierre Levraud, Georges Lutfalla, Mai Nguyen-Chi
Neutrophils use superoxide to control bacterial infection at a distance
published pages: e1007157, ISSN: 1553-7374, DOI: 10.1371/journal.ppat.1007157
PLOS Pathogens 14/7 2020-01-29
2018 Laurent Boucontet, Gabriella Passoni, Valéry Thiry, Ludovico Maggi, Philippe Herbomel, Jean-Pierre Levraud, Emma Colucci-Guyon
A Model of Superinfection of Virus-Infected Zebrafish Larvae: Increased Susceptibility to Bacteria Associated With Neutrophil Death
published pages: , ISSN: 1664-3224, DOI: 10.3389/fimmu.2018.01084
Frontiers in Immunology 9 2020-01-29
2019 Elena Kardash, Hanh Nguyen, Martin Behrndt, Carl-Philipp Heisenberg, Nadine Peyrieras, Marcos Gonzalez-Gaitan
A contractile acto-myosin belt promotes growth anisotropy during the early stages of pectoral fin development in zebrafish.
published pages: , ISSN: , DOI: 10.1101/512038
Biorxiv 2020-01-29
2018 Neophytos Christodoulou, Christos Kyprianou, Antonia Weberling, Ran Wang, Guizhong Cui, Guangdun Peng, Naihe Jing, Magdalena Zernicka-Goetz
Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation
published pages: 1278-1289, ISSN: 1465-7392, DOI: 10.1038/s41556-018-0211-3
Nature Cell Biology 20/11 2020-01-29

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The information about "IMAGEINLIFE" are provided by the European Opendata Portal: CORDIS opendata.

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