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OncoSeq

OncoSeq: an innovative single-cell system for immunomonitoring

Total Cost €

0

EC-Contrib. €

0

Partnership

0

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 OncoSeq project word cloud

Explore the words cloud of the OncoSeq project. It provides you a very rough idea of what is the project "OncoSeq" about.

stratification    spectrometry    sequencing    disease    droplet    internal    flow    multiplexing    validated    marker    immunotherapies    plays    quantity    cytometer    100s    output    le    patient    ngs    diagnostic    maps    markets    tumour    microfluidics    specialising    liquid    plan    phenotype    generation    readout    ultimately    diagnosis    immune    cell    oncology    markers    follow    fluorescence    site    consumables    cells    capacity    exist    mass    tens    transferred    licensing    cancer    simultaneous    barcoding    tool    creation    immuno    industrial    prototype    erc    once    monitoring    cytometry    evoevo    clinical    host    thousands    seq    throughput    strategies    transcriptome    quality    adapt    molecular    infiltrate    prognostic    entirely    cytof    transcriptomic    immunity    company    progression    sale    create    genotype    phenotypic    circulating    single    vital    powerful    central    biopsy    rna    oncoseq    infiltrating    instruments    context    tumor    resolution    prognosis    immunotherapy    decision   

Project "OncoSeq" data sheet

The following table provides information about the project.

Coordinator
PARMENIDES STIFTUNG 

Organization address
address: KIRCHPLATZ 1
city: MUNCHEN
postcode: 82049
website: www.parmenides-foundation.org

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Germany [DE]
 Total cost 150˙000 €
 EC max contribution 150˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2017-PoC
 Funding Scheme ERC-POC
 Starting year 2017
 Duration (year-month-day) from 2017-11-01   to  2018-10-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    PARMENIDES STIFTUNG DE (MUNCHEN) coordinator 41˙250.00
2    ECOLE SUPERIEURE DE PHYSIQUE ET DECHIMIE INDUSTRIELLES DE LA VILLE DEPARIS FR (PARIS) participant 108˙750.00

Map

 Project objective

Host immunity plays a central and complex role in tumour progression, and the quality and quantity of immune infiltrate at the tumour site is used as a prognostic marker of cancer progression. Therefore, detailed single-cell analysis of tumor infiltrating immune cells, and ultimately liquid biopsy of circulating immune cells, is of vital importance for the development of new and improved immunotherapy strategies, and for diagnosis, prognosis, patient stratification and follow-up. We propose in OncoSeq to adapt the droplet barcoding microfluidics system, an output from the ERC EVOEVO project, to develop a novel “molecular cytometer” for high-throughput transcriptomic and phenotypic analysis, at the single-cell level, of tumor infiltrating or circulating immune cells. Readout of genotype and phenotype will be entirely based on next generation sequencing (NGS) allowing higher phenotypic multiplexing capacity (100s of phenotypic markers) than fluorescence (Flow cytometry) or mass spectrometry (CyTOF) based approaches (≤40 markers) and simultaneous RNA-sequencing (RNA-seq), allowing the creation of high-resolution phenotype-transcriptome maps for tens of thousands of single cells. This will be a powerful tool for cancer prognosis, clinical decision making and monitoring of disease progression, especially in the context of immunotherapy. So far, no such diagnostic instruments, enabling high-throughput single-cell phenotypic and transcriptomic analysis, exist. The technology developed will be transferred to our industrial partner through licensing for internal development of novel immunotherapies. In addition, once the prototype system is fully validated, we plan, with our industrial partners, to create a new company specialising in the sale of instruments and associated consumables for clinical single-cell immuno-monitoring for the research and clinical oncology markets.

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The information about "ONCOSEQ" are provided by the European Opendata Portal: CORDIS opendata.

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