Explore the words cloud of the PANGAIA project. It provides you a very rough idea of what is the project "PANGAIA" about.
The following table provides information about the project.
UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA
|Coordinator Country||Italy [IT]|
|Total cost||1˙140˙800 €|
|EC max contribution||1˙140˙800 € (100%)|
1. H2020-EU.1.3.3. (Stimulating innovation by means of cross-fertilisation of knowledge)
|Duration (year-month-day)||from 2020-01-01 to 2023-12-31|
Take a look of project's partnership.
|1||UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA||IT (MILANO)||coordinator||197˙800.00|
|2||GENETON S.R.O.||SK (BRATISLAVA)||participant||322˙000.00|
|3||UNIVERSITAET BIELEFELD||DE (BIELEFELD)||participant||202˙400.00|
|4||INSTITUT PASTEUR||FR (PARIS CEDEX 15)||participant||147˙200.00|
|5||STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN||NL (UTRECHT)||participant||142˙600.00|
|6||UNIVERZITA KOMENSKEHO V BRATISLAVE||SK (BRATISLAVA)||participant||128˙800.00|
|7||ILLUMINA CAMBRIDGE LTD||UK (GREAT ABINGTON)||participant||0.00|
|8||CORNELL UNIVERSITY||US (ITHACA NY)||partner||0.00|
|9||NATIONAL UNIVERSITY CORPORATION THEUNIVERSITY OF TOKYO||JP (TOKYO)||partner||0.00|
|10||Simon Fraser University||CA (BURNABY)||partner||0.00|
|11||The Pennsylvania State University||US (University Park)||partner||0.00|
Genomes are strings over the letters A,C,G,T, which represent nucleotides, the building blocks of DNA. In view of ultra-large amounts of genome sequence data emerging from ever more and technologically rapidly advancing genome sequencing devices—in the meantime, amounts of sequencing data accrued are reaching into the exabyte scale—the driving, urgent question is: how can we arrange and analyze these data masses in a formally rigorous, computationally efficient and biomedically rewarding manner? Graph based data structures have been pointed out to have disruptive benefits over traditional sequence based structures when representing pan-genomes, sufficiently large, evolutionarily coherent collections of genomes. This idea has its immediate justification in the laws of genetics: evolutionarily closely related genomes vary only in relatively little amounts of letters, while sharing the majority of their sequence content. Graph-based pan-genome representations that allow to remove redundancies without having to discard individual differences, make utmost sense. In this project, we will put this shift of paradigms—from sequence to graph based representations of genomes—into full effect. As a result, we can expect a wealth of practically relevant advantages, among which arrangement, analysis, compression, integration and exploitation of genome data are the most fundamental points. In addition, we will also open up a significant source of inspiration for computer science itself.
|Kick-off meeting report||Other||2020-03-06 16:00:11|
Take a look to the deliverables list in detail: detailed list of PANGAIA deliverables.
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The information about "PANGAIA" are provided by the European Opendata Portal: CORDIS opendata.
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