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BE-OPTICAL SIGNED

Advanced BiomEdical OPTICAL Imaging and Data Analysis

Total Cost €

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EC-Contrib. €

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Partnership

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Project "BE-OPTICAL" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITAT POLITECNICA DE CATALUNYA 

Organization address
address: CALLE JORDI GIRONA 31
city: BARCELONA
postcode: 8034
website: www.upc.edu

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Spain [ES]
 Project website http://beoptical.eu
 Total cost 3˙495˙300 €
 EC max contribution 3˙495˙300 € (100%)
 Programme 1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
 Code Call H2020-MSCA-ITN-2015
 Funding Scheme MSCA-ITN-ETN
 Starting year 2015
 Duration (year-month-day) from 2015-10-01   to  2019-09-30

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITAT POLITECNICA DE CATALUNYA ES (BARCELONA) coordinator 743˙618.00
2    GEORG-AUGUST-UNIVERSITAT GOTTINGENSTIFTUNG OFFENTLICHEN RECHTS DE (GOTTINGEN) participant 498˙432.00
3    MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV DE (MUENCHEN) participant 498˙432.00
4    UNIWERSYTET MIKOLAJA KOPERNIKA W TORUNIU PL (TORUN) participant 448˙274.00
5    THE UNIVERSITY COURT OF THE UNIVERSITY OF ST ANDREWS UK (ST ANDREWS) participant 273˙287.00
6    UNIVERSITY OF GLASGOW UK (GLASGOW) participant 273˙287.00
7    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 262˙875.00
8    PICOQUANT INNOVATIONS GMBH DE (BERLIN) participant 249˙216.00
9    INSTITUTO DE MICROCIRUGIA OCULAR DOS SLP ES (BARCELONA) participant 247˙872.00

Map

 Project objective

Biomedical imaging is a research field that is producing ground breaking scientific discoveries that enhance the health and life quality of European citizens and have a huge economic impact. In order to maintain Europe’s leading position in the field, it is crucial to invest in the people who will lead R&D, and to promote the academic-private sector partnerships that will transfer the novel technologies to the market. In order to meet these needs, BE-OPTICAL will provide a unique and structured training programme to 14 ESRs in a wide range of optical imaging technologies and signal processing tools, including fluorescence spectroscopy and microscopy, optical coherence tomography, optogenetics, engineered nanomaterials and signal processing tools. The research is structured in 4 WPs: super-resolution optical imaging for the analysis of cellular processes (WP1), high-resolution optical imaging of cardiac tissue (WP2), advanced instrumentation for ophthalmic imaging (WP3), and optical components, methods and software for image analysis (WP4). Comprising 7 leading academic groups and 2 non-academic partners in 5 European countries, BE-OPTICAL brings together an interdisciplinary team of physicists, engineers and medical doctors, with complementary expertise in optical imaging, nanotechnology, computer science, complex systems and data analysis. The non-academic partners are a leading company in fluorescence instrumentation and an internationally recognised ophthalmology clinic, with the most advanced technology and expertise in ocular diseases. The training programme will provide the ESRs with a broad understanding of how a wide range of optical imaging technologies and data processing tools work, and will open for them a wide range of job opportunities. The ESRs will apply this knowledge to advance the early diagnosis of highly significant diseases. The ESRs will also gain insight into clinical studies of novel imaging technologies and the commercialization process.

 Deliverables

List of deliverables.
Prototype of the fibre-optic FRET imaging system Demonstrators, pilots, prototypes 2020-03-06 16:55:37
Software library for camera control, calibration, 4D reconstruction, motion analysis and artefact removal Other 2020-03-06 16:55:35
Report on the performance of the Airy beam Light-Sheet Microscopy for imaging biological specimens Documents, reports 2020-03-06 16:14:19
Report on the performance of instrument for the complete evaluation of vision, control software and user interface Documents, reports 2020-03-06 16:14:03
Report on the NS substrate validation with GFP-marked living cells Documents, reports 2020-03-06 16:13:55
Prototype of the endoscopic FRET imaging system Demonstrators, pilots, prototypes 2020-03-06 16:13:52
Final conference Other 2020-03-06 16:13:40
Patent application Websites, patent fillings, videos etc. 2020-03-06 16:13:53
Prototype of the imaging system (optics and electronics) Demonstrators, pilots, prototypes 2020-03-06 16:14:29
Report on sample preparation, experimental conditions and data analysis for time-resolved multiplexing in cell microscopy Documents, reports 2020-03-06 16:14:20
Report describing the FPGA-based SOFI Documents, reports 2020-03-06 16:14:02
Report on the performance of the HDA prototype that incorporates the identified incoherent diode-based light source Documents, reports 2020-03-06 16:09:06
BE-OPTICAL dissemination videos + brochure Websites, patent fillings, videos etc. 2020-03-06 16:08:03
Report on the performance of the combined SOFI-LSM techniques for imaging life organisms such as nematodes Documents, reports 2020-03-06 16:14:06
Report on the performance of the hyperspectral imaging instrument for the dynamic recording of the ocular fundus Documents, reports 2020-03-06 16:14:02
Report on enhanced light collection of multiphoton confocal function Documents, reports 2020-03-06 16:55:35
Workshop 4 Other 2020-03-06 16:08:18
Report on novel deconvolution techniques which rectify SOFI brightness skewing by delivering images of linear intensity scaling Documents, reports 2020-03-06 16:08:02
Final report Documents, reports 2020-03-06 16:14:06
Report on clinical studies of eyes with ocular diseases Documents, reports 2020-03-06 16:14:04
Prototype and report of a SS-OCT instrument for heart imaging Demonstrators, pilots, prototypes 2020-03-06 16:08:13
Prototype and report of an OCT system that can be integrated in the instrument for the evaluation of vision in a fully autonomous and automatic way within a clinical environment Demonstrators, pilots, prototypes 2020-03-06 16:14:07
Report on the techniques for classification and analysis of 2D images of cardiac and opthalmic images Documents, reports 2020-03-06 16:14:04
Report on the incoherent emission characteristics of diode light sources under various optical feedback and injection configurations Documents, reports 2020-03-06 16:13:50
Report on the performance of the method of reducing refractive index without altering electrical function Documents, reports 2020-03-06 16:55:35
Demonstration of living cell membrane imaging using NS substrates Demonstrators, pilots, prototypes 2020-03-06 16:14:03
Workshop 3 Other 2020-03-06 16:09:04
Prototype and report of a SLO-OCT instrument for opthalmic imaging and its performance for in-vivo imaging Demonstrators, pilots, prototypes 2020-03-06 16:08:18
Prototype of a hyperspectral imaging instrument for the dynamic recording of the ocular fundus Demonstrators, pilots, prototypes 2020-03-06 16:08:11
Prototype of a fluorescence decay based multiplexing system Demonstrators, pilots, prototypes 2019-06-06 16:06:16
Mid-Term Review Meeting + Workshop 2 Other 2019-05-09 09:18:26
Demonstration of active spatio-temporal modulation of the phase and amplitude for non-diffractive beam generation Demonstrators, pilots, prototypes 2019-05-13 12:56:36
Workshop 1 + Hands on Modules 3+4 Other 2019-05-13 12:56:47
Prototype for Airy beam Light-Sheet microscope Demonstrators, pilots, prototypes 2019-05-13 12:56:47
Prototype of the combined SOFI-Light-Sheet microscope Demonstrators, pilots, prototypes 2019-05-13 12:56:36
Report describing the SOFI-Light-Sheet microscope Documents, reports 2019-05-13 12:56:42
School 2 + Hands on modules 1+2 Other 2019-05-13 12:56:48
Report describing the Airy beam Light-Sheet microscope Documents, reports 2019-05-13 12:56:48
School 1 Other 2019-05-09 09:18:26

Take a look to the deliverables list in detail:  detailed list of BE-OPTICAL deliverables.

 Publications

year authors and title journal last update
List of publications.
2019 Pablo Amil, Miguel C. Soriano, Cristina Masoller
Machine learning algorithms for predicting the amplitude of chaotic laser pulses
published pages: 113111, ISSN: 1054-1500, DOI: 10.1063/1.5120755
Chaos: An Interdisciplinary Journal of Nonlinear Science 29/11 2019-11-26
2019 Philip Wijesinghe, Adrià Escobet-Montalbán, Mingzhou Chen, Peter R. T. Munro, Kishan Dholakia
Optimal compressive multiphoton imaging at depth using single-pixel detection
published pages: 4981, ISSN: 0146-9592, DOI: 10.1364/ol.44.004981
Optics Letters 44/20 2019-11-26
2019 Ewa Maczynska, Jagoda Rzeszewska-Zamiara, Alfonso Jimenez Villar, Maciej Wojtkowski, Bartlomiej J. Kaluzny, Ireneusz Grulkowski
Air-Puff-Induced Dynamics of Ocular Components Measured with Optical Biometry
published pages: 1979, ISSN: 1552-5783, DOI: 10.1167/iovs.19-26681
Investigative Opthalmology & Visual Science 60/6 2019-11-11
2019 Alfonso Jiménez-villar, Ewa Mączyńska, Artur Cichański, Maciej Wojtkowski, Bartłomiej J. Kałużny, Ireneusz Grulkowski
High-speed OCT-based ocular biometer combined with an air-puff system for determination of induced retraction-free eye dynamics
published pages: 3663, ISSN: 2156-7085, DOI: 10.1364/boe.10.003663
Biomedical Optics Express 10/7 2019-11-11
2019 Donatus Halpaap, Jordi Tiana-Alsina, Meritxell Vilaseca, Cristina Masoller
Experimental characterization of the speckle pattern at the output of a multimode optical fiber
published pages: 27737, ISSN: 1094-4087, DOI: 10.1364/oe.27.027737
Optics Express 27/20 2019-11-11
2018 Tommaso Alterini; Fernando Díaz-Doutón; Meritxell Vilaseca
Hyperspectral fundus camera with sensitivity beyond the visible range: a pilot study
published pages: 5865, ISSN: , DOI:
Investigative Ophthalmology & Visual Science 59 2019-11-11
2019 Donatus Halpaap, Carlos E. García-Guerra, Meritxell Vilaseca, Cristina Masoller
Speckle reduction in double-pass retinal images
published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-019-41168-3
Scientific Reports 9/1 2019-11-11
2019 Dawid Borycki, Michał Hamkało, Maciej Nowakowski, Maciej Szkulmowski, Maciej Wojtkowski
Spatiotemporal optical coherence (STOC) manipulation suppresses coherent cross-talk in full-field swept-source optical coherence tomography
published pages: 2032, ISSN: 2156-7085, DOI: 10.1364/boe.10.002032
Biomedical Optics Express 10/4 2019-11-11
2019 Tommaso Alterini; Fernando Díaz-Doutón; Francisco J. Burgos-Fernández; Laura González; Carlos Mateo; Meritxell Vilaseca
Fast visible and extended near-infrared multispectral fundus camera
published pages: 1, ISSN: 1083-3668, DOI: 10.1117/1.jbo.24.9.096007
Journal of Biomedical Optics 24/09 2019-11-11
2018 Ireneusz Grulkowski; Ewa Maczynska; Jagoda Rzeszewska; Alfonso Jimenez-Villar; Maciej Wojtkowski; Bartlomiej Kaluzny
Relation between IOP and air-puff-induced dynamics of ocular components in human eyes measured with full-eye-length SS-OCT
published pages: 279, ISSN: , DOI:
Investigative Ophthalmology & Visual Science 59 2019-11-11
2019 Pablo Amil, Laura González, Elena Arrondo, Cecilia Salinas, J. L. Guell, Cristina Masoller, Ulrich Parlitz
Unsupervised feature extraction of anterior chamber OCT images for ordering and classification
published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-38136-8
Scientific Reports 9/1 2019-05-09
2018 Raúl A. Quiñonez Uribe, Stefan Luther, Laura Diaz-Maue, Claudia Richter
Energy-Reduced Arrhythmia Termination Using Global Photostimulation in Optogenetic Murine Hearts
published pages: 1651, ISSN: 1664-042X, DOI: 10.3389/fphys.2018.01651
Frontiers in Physiology 9 2019-05-09
2018 Adrià Escobet-Montalbán, Roman Spesyvtsev, Mingzhou Chen, Wardiya Afshar Saber, Melissa Andrews, C. Simon Herrington, Michael Mazilu, Kishan Dholakia
Wide-field multiphoton imaging through scattering media without correction
published pages: eaau1338, ISSN: 2375-2548, DOI: 10.1126/sciadv.aau1338
Science Advances 4/10 2019-05-09
2018 Adrià Escobet-Montalbán, Federico M. Gasparoli, Jonathan Nylk, Pengfei Liu, Zhengyi Yang, and Kishan Dholakia
Three-photon light-sheet fluorescence microscopy
published pages: 5484-5487, ISSN: 0146-9592, DOI: 10.17630/ff413c1a-3670-427f-9f3f-670518b172b6
Optics Letters 43/21 2019-05-09

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