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List_MAPS SIGNED

Training and research in Listeria monocytogenes Adaptation through Proteomic and Transcriptome deep Sequencing Analysis

Total Cost €

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EC-Contrib. €

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Partnership

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 List_MAPS project word cloud

Explore the words cloud of the List_MAPS project. It provides you a very rough idea of what is the project "List_MAPS" about.

models    animal    highest    circuitry    virulence    world    workshops    medical    listeria    theory    silico    composition    influence    annum    environmental    summer    proteomics    entrepreneurial    tackle    esrs    transcripts    competitive    regulatory    academia    class    scientific    innovative    combination    sequencing    competences    care    mathematics    socio    transferable    transcriptomics    constructivist    young    ubiquitous    replacing    phd    collections    combining    creative    list    burdensome    skills    pathogens    secure    tract    biology    maps    isolates    esr    recalls    courses    transfer    tool    transcriptome    bioinformatics    proposes    teams    training    mortality    exploited    epigenetics    dynamic    network    movement    educational    operation    drives    expertise    foodborne    fork    farm    food    pathogen    costing    learning    transcriptional    millions    deep    optimise    microbiology    mobility    throughput    gi    blended    excellent    schools    co    safety    monocytogenes    industry    decipher    understand   

Project "List_MAPS" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITE DE BOURGOGNE 

Organization address
address: ESPLANADE ERASME MAISON DE L UNIVERSITE
city: DIJON CEDEX
postcode: 21078
website: www.u-bourgogne.fr

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country France [FR]
 Project website http://blog.u-bourgogne.fr/list-maps
 Total cost 2˙841˙979 €
 EC max contribution 2˙841˙979 € (100%)
 Programme 1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
 Code Call H2020-MSCA-ITN-2014
 Funding Scheme MSCA-ITN-ETN
 Starting year 2015
 Duration (year-month-day) from 2015-03-01   to  2019-02-28

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITE DE BOURGOGNE FR (DIJON CEDEX) coordinator 394˙313.00
2    INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT FR (PARIS CEDEX 07) participant 525˙751.00
3    NATIONAL UNIVERSITY OF IRELAND GALWAY IE (Galway) participant 398˙511.00
4    GENXPRO GMBH DE (FRANKFURT) participant 290˙752.00
5    KOBENHAVNS UNIVERSITET DK (KOBENHAVN) participant 290˙081.00
6    SYDDANSK UNIVERSITET DK (ODENSE M) participant 290˙081.00
7    UNIVERSITY COLLEGE CORK - NATIONAL UNIVERSITY OF IRELAND, CORK IE (Cork) participant 265˙674.00
8    WAGENINGEN UNIVERSITY NL (WAGENINGEN) participant 255˙374.00
9    BIOFILM CONTROL SAS FR (SAINT-BEAUZIRE) participant 131˙437.00
10    Lactalis FR (Paris) partner 0.00
11    LIFE TECHNOLOGIES GmbH DE (Darmstadt) partner 0.00

Map

 Project objective

List_MAPS is a network dedicated to the training of innovative young researchers in the field of Microbiology and Systems Biology. It focuses on Listeria monocytogenes, an ubiquitous pathogen that is in the EU the leading cause of mortality and food recalls due to foodborne pathogens, costing the EU millions of euro per annum in medical care and associated costs in the food sector. ESRs will develop scientific expertise through PhD training, mobility of researchers, summer schools, workshops and transfer-of-knowledge in the areas of Transcriptomics, Proteomics, Sequencing and Systems Biology. Working in this dynamic state-of-the-art field will provide for training of ESRs to the highest level, with co-operation and movement between academia and industry that will enhance ESR training. The overall objective of the research programme is to tackle food safety through the combination of high throughput Epigenetics, Deep sequencing of transcripts, Proteomics, Bioinformatics, Mathematics and Microbiology to decipher the transcriptional regulatory circuitry that drives adaptation and virulence of L. monocytogenes from farm to fork. This information will be exploited to understand how environmental conditions and food composition can influence GI tract adaptation/virulence and to develop an innovative transcriptome-based tool to assess in silico the virulence of large collections of isolates. This developed tool aims at replacing the currently used burdensome animal models. In addition to excellent scientific competences, competitive research requires a range of transferable skills to secure funding, optimise management of working teams and exploit research results. List_MAPS proposes an innovative approach to the training of ESRs in these transferable skills, combining socio-constructivist learning theory with Open Educational Resources to design and provide blended learning courses. This will secure world-class training for creative, entrepreneurial and innovative ESRs.

 Deliverables

List of deliverables.
Transcriptome/Subproteo me database Other 2019-07-22 08:34:23
Effect food characteristics upon virulence Other 2019-07-22 08:34:29
Effect food constituents upon gene expression Other 2019-07-22 08:34:36
Database structured Other 2019-07-22 08:34:23
Workshop 3 Other 2019-07-22 08:34:23
Conference Other 2019-07-22 08:26:50
Network-wide event year 2 Other 2019-06-20 10:00:45
Mid term review meeting Other 2019-06-20 10:00:45
Network-wide events year 1 Other 2019-06-20 10:00:45

Take a look to the deliverables list in detail:  detailed list of List_MAPS deliverables.

 Publications

year authors and title journal last update
List of publications.
2018 M. Villoria Recio, H. Ingmer, M. Halberg Larsen
Acid treated chitin attenuates virulence expression in Listeria monocytogenes. Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2018 N. Crespo Tapia, H MW. Den Besten, T. Abee
Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan
A high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 C Marinho, P. Dos Santos, B. Kallipolitis, D. Garmyn, L. Gal, C. O’Byrne, P. Piveteau, C. O’Byrne
Unravelling the regulatory role of the oB-dependent non-coding RNA Rli47 in Listeriamonocytogenes.Poster
published pages: , ISSN: , DOI:
2019-06-20
2017 P. Dos Santos, D. Sabharwal, P. Menendez-Gil, E.M. Sternkopf Lillebaek, B.H. Kallipolitis
A family of sRNAs plays a role in the response of Listeria monocytogenes to heme toxicity. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 T. Santos, L. Théron, C. Chambon, D. Viala, D. Centeno, M. Hébraud
MALDI Mass Spectrometry Imaging and in situ microproteomics of Listeria monocytogenes Biofilms. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 T. Santos, C. Chambon, D. Viala, J. Estebin, M. Hébraud
Listeria monocytogenes planktonic and sessile cells adaptation to temperatures seen through shotgun proteomics. Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2016 I. Sultan
Modelling of Bacterial Transcription Factor Binding Sites. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 N. Crespo Tapia, H MW. Den Besten, T. Abee
Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface.Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2018 T. Santos, C. Chambon, D. Viala, J. Esbelin, M. Hébraud
Listeria monocytogenes planktonic and sessile cells adaptation to different temperatures seen through Shotgun proteomics. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 I. Sultan, S. Schbath, P. Nicolas
Statistical modelling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2017 T. Santos, L. Théron, C. Chambon, D. Viala, D. Centeno, M. Hébraud
MALDI Imaging and Profiling Mass Spectrometry approach for the analysis of Listeria monocytogenes biofilms exposed to desiccation. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2018 M. Villoria Recio, H. Ingmer, M. Halberg Larsen
Chitin attenuates virulence expression in Listeria monocytogenes. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2018 A Dorey, B. O’Donoghue, C. Bennett, A. Conneely, C. O’Byrne
The impact of temperature on the response of L. monocytogenes to visible light. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2017 I. Sultan, P. Nicolas, S. Schbath, V. Fromion
Improved Promoter sequence models for de novo Transcription Factor Binding site prediction in bacteria. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 B. Lee, S. Cole, T. Bernardi, S. Badel, L. Guillier, P. Piveteau
Association between Listeria monocytogenes genotypes and biofilm formations under food processing environments. Poster
published pages: , ISSN: , DOI:
2019-06-20
2017 T. Santos, C. Chambon, D. Viala, J. Esbelin, M. Hébraud
Adaptation of Listeria monocytogenes to temperature: exploration of intracellular subproteome through shotgun proteomics. Poster
published pages: , ISSN: , DOI:
2019-06-20
2017 V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan
Role of high-fat diet on host susceptibility to infection with Listeria monocytogenes. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2017 T. Santos
Approche protéomique pour explorer l’adaptation de Listeria monocytogenes à son environnement. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 P. Dos Santos, D. Sabharwal, J-H Christensen, M Z Brunhede, E M Sternkopf Lillebaek, B.H. Kallipolitis,
The small regulatory RNAs LhrC1-5 contribute to the response of Listeria monocytogenes to heme stress. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2018 I. Sultan, S. Schbath, P. Nicolas
Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 P Dos Santos, D. Sabharwal, J-H Christensen, M Z Brunhede, E M Sternkopf Lillebaek, B.H. Kallipolitis
The small regulatory RNAs LhrC1-5 contribute to the response of Listeria monocytogenes to heme stress. Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2018 V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan
A high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2018 I. Sultan, S. Schbath, P. Nicolas
Statistical modeling of bacterial promoter sequences for regulatory motif discovery using expression data. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 V. Las Heras, R. Rubio, P. Cotter, C. Hill, G. Gahan
LasA high fat diet influences host susceptibility to Listeria monocytogenes infection in a murine disease model. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2016 Gal L, Boussemart G, Ortiz Camargo A, Garmy D, Piveteau P
Investigation of rhizosphere as a niche for Listeria monocytogenes
published pages: , ISSN: , DOI:
2019-06-20
2018 T. Santos, C. Chambon, D. Viala, J. Estebin, M. Hébraud
Listeria monocytogenes planktonic and sessile cells adaptation to temperatures seen through shotgun proteomics. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2017 V. Las Heras, K. Govindarajan, S. Joyce, P. Casey, R. Rubio, P. Cotter, C. Hill, C. Gahan
Impact of dietary fat content on host susceptibility to Listeria monocytogenes infection. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 I Sultan, S. Schbath, P. Nicolas
Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcription profiles. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2018 A Dorey, B. O’Donoghue, C. Bennett, A. Conneely, C. O’Byrne
The impact of temperature on the response of L. monocytogenes to visible light. Poster
published pages: , ISSN: , DOI:
2019-06-20
2018 C. Marinho, P. Dos Santos, B. Kallipolitis, D. Garmyn, L. Gal, C. O’Byrne, P. Piveteau, C. O’Byrne
Unravelling the regulatory role of the oB-dependent non-coding RNA Rli47 in Listeriamonocytogenes . Oral presentation.
published pages: , ISSN: , DOI:
2019-06-20
2018 T. Santos, C. Chambon, D. Viala, J. Esbelin, M. Hébraud
Listeria monocytogenes planktonic and sessile cells adaptation to different temperatures seen through Shotgun proteomics. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2017 M. Villoria Recio, M. Halberg Larsen, H. Ingmer
The expression of the chitinolytic system of Listeria monocytogenes is subject to different regulation depending on carbon source utilisation including cellobiose and glucose.
published pages: , ISSN: , DOI:
2019-06-20
2018 B Lee, S. Cole, T. Bernardi, S. Badel, L. Guillier, P. Piveteau
Association between Listeria monocytogenes genotypes and biofilm formations under food processing environements. Oral presentation
published pages: , ISSN: , DOI:
2019-06-20
2017 T. Santos
Développement d’une approche d’imagerie par spectrometrie de masse pour explorer des biofilms de Listeria monocytogenes exposés à un stress de déshumidification. Poster.
published pages: , ISSN: , DOI:
2019-06-20
2018 Amber Dorey, Catarina Marinho, Pascal Piveteau, Conor O\'Byrne
Role and regulation of the stress activated sigma factor sigma B (σB) in the saprophytic and host-associated life stages of Listeria monocytogenes
published pages: , ISSN: , DOI: 10.1016/bs.aambs.2018.11.001
Advances in Applied Microbiology 2019-06-20
2018 Patrícia Teixeira dos Santos, Pernille Tholund Larsen, Pilar Menendez-Gil, Eva Maria Sternkopf Lillebæk, Birgitte Haahr Kallipolitis
Listeria monocytogenes Relies on the Heme-Regulated Transporter hrtAB to Resist Heme Toxicity and Uses Heme as a Signal to Induce Transcription of lmo1634, Encoding Listeria Adhesion Protein
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.03090
Frontiers in Microbiology 9 2019-06-20
2019 Vanessa Las Heras, Adam G. Clooney, Feargal J. Ryan, Raul Cabrera-Rubio, Pat G. Casey, Cara M. Hueston, Jorge Pinheiro, Justine K. Rudkin, Silvia Melgar, Paul D. Cotter, Colin Hill, Cormac G. M. Gahan
Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection
published pages: , ISSN: 2049-2618, DOI: 10.1186/s40168-019-0621-x
Microbiome 7/1 2019-06-20
2018 Natalia Crespo Tapia, Heidy M.W. den Besten, Tjakko Abee
Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface
published pages: 20-27, ISSN: 0168-1605, DOI: 10.1016/j.ijfoodmicro.2018.03.009
International Journal of Food Microbiology 273 2019-06-20
2018 Patricia Teixeira Dos Santos
Adaptation of Listeria monocytogenes to transmission between environments
published pages: , ISSN: , DOI:
2019-06-20
2018 Patrícia T. dos Santos, Pilar Menendez-Gil, Dharmesh Sabharwal, Jens-Henrik Christensen, Maja Z. Brunhede, Eva M. S. Lillebæk, Birgitte H. Kallipolitis
The Small Regulatory RNAs LhrC1–5 Contribute to the Response of Listeria monocytogenes to Heme Toxicity
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00599
Frontiers in Microbiology 9 2019-06-20
2018 Mette Thorsing, Patrícia Teixeira dos Santos, Birgitte Haahr Kallipolitis
Small RNAs in major foodborne pathogens: from novel regulatory activities to future applications
published pages: 120-128, ISSN: 0958-1669, DOI: 10.1016/j.copbio.2017.08.006
Current Opinion in Biotechnology 49 2019-06-20
2017 P.T. dos Santos, D. Sabharwal, P. Menendez-Gil, E. M. Sternkopf Lillebaek, B. H. Kallipolitis
A family of sRNAs plays a role in the response of Listeria monocytogenes to heme toxicity
published pages: , ISSN: , DOI:
2019-06-20
2017 N. Crespo Tapia, H.M. W. den Besten, T. Abee
Glycerol metabolism induces biofilm formation at the air-liquid interface in Listeria monocytogenes
published pages: , ISSN: , DOI:
2019-06-20
2017 A. L. Dorey, A. Oliveira, K. NicAogain, B. O\'Donoghue, C. P. O\'Byrne
The effects of growth conditions and secondary environmental stresses on the response of Listeria monocytogenes to visible light
published pages: , ISSN: , DOI:
2019-06-20
2016 A.L.Dorey, K.NicAogain, B.O\'Donoghue, C.Bennett, A.Conneely, C.P O\'Byrne
Investigation into the Response of Listeria monocytogenes to 470 nm Blue Light
published pages: , ISSN: , DOI:
2019-06-20
2017 Bo-Hyung Lee, Michel Hébraud, Thierry Bernardi
Increased Adhesion of Listeria monocytogenes Strains to Abiotic Surfaces under Cold Stress
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2017.02221
Frontiers in Microbiology 8 2019-06-20
2017 C. Marinho, D. Garmyn, L. Gal, C. O\'Byrne, P. Piveteau
oB and agrA regulation in Listeria monocytogenes: effect on survival in soil/rhizosphere under biotic and abiotic conditions
published pages: , ISSN: , DOI:
2019-06-20
2017 L. Gal, A. Ortiz Camargo, D. Garmyn, P. Piveteau
Ecology of Listeria monocytogenes in soil: effect of the biotic environment on survival and transcriptome reshaping
published pages: , ISSN: , DOI:
2019-06-20
2017 A. Ortiz Camargo, L. Gal, A. Spor, S. Gaba, D. Garmyn, P. Piveteau
Effect of habitat disturbances on the population dynamics of allochthon L. monocytogenes in soil
published pages: , ISSN: , DOI:
2019-06-20
2017 T. Santos, L. Théron, D. Centeno, C. Chambon, D. Viala, M. Hébraud
Development of a MALDI Imaging Mass Spectrometry approach to bacterial proteomics: first application to Listeria monocytogenes biofilms exposed to desiccation
published pages: , ISSN: , DOI:
2019-06-20
2017 B. Lee, S. Cole, M. Hébraud, T. Bernardi, S. Badel-Berchoux
Biofilm formation of Listeria monocytogenes strains in food processing environements
published pages: , ISSN: , DOI:
2019-06-20
2016 N. Crespo Tapia, S. Toson, H. Den Besten, T. Abee
Impact of carbon sources on Listeria monocytogenes biofilm formation
published pages: , ISSN: , DOI:
2019-06-20
2017 I. Sultan, S. Schbath, V. Fromion, P. Nicolas
Improved promoter sequence models for de novo transcription factor binding site prediction in bacteria
published pages: , ISSN: , DOI:
2019-06-20
2018 Julia Esbelin, Tiago Santos, Michel Hébraud
Desiccation: An environmental and food industry stress that bacteria commonly face
published pages: 82-88, ISSN: 0740-0020, DOI: 10.1016/j.fm.2017.07.017
Food Microbiology 69 2019-06-20
2018 Patrícia T. dos Santos, Pilar Menendez-Gil, Dharmesh Sabharwal, Jens-Henrik Christensen, Maja Z. Brunhede, Eva M. S. Lillebæk, Birgitte H. Kallipolitis
The Small Regulatory RNAs LhrC1–5 Contribute to the Response of Listeria monocytogenes to Heme Toxicity
published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00599
Frontiers in Microbiology 9 2019-06-20
2019 Amber L. Dorey, Fabio Giovannercole, Duarte Guerreiro, Catarina Marinho
Microbial stress meeting: From systems to molecules and back
published pages: 66-70, ISSN: 1871-6784, DOI: 10.1016/j.nbt.2018.09.002
New Biotechnology 49 2019-06-20

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