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ArtifiCell SIGNED

Synthetic Cell Biology: Designing organelle transport mechanisms

Total Cost €

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EC-Contrib. €

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Partnership

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 ArtifiCell project word cloud

Explore the words cloud of the ArtifiCell project. It provides you a very rough idea of what is the project "ArtifiCell" about.

approached    form    protein    peptide    charged    mechanisms    cages    chosen    negatively    backbones    nucleic    re    physiology    transport    genetic    avenues    coats    delivered    phosphate    synthetic    capture    living    templated    nobel    trigger    idea    imagine    pi    de    artificially    direct    ultimately    synthetically    templates    cell    core    programmed    fuse    externally    tethers    oligonucleotides    bilayers    pna    notion    exist    vision    fusion    barrier    secretory    readily    innovative    prize    central    equivalents    functional    complementary    eyed    apparatus    area    versions    contend    dna    producing    start    membrane    someday    phospholipid    engineering    natural    plasma    biology    physics    organisms    functions    encoded    lack    medicine    hope    break    vesicle    fundamental    introduce    2013    naturally    linked    impacts    almost    exocytosis    cells    speculatively    snares    origami    pnas    supplied    regulation    learned    rnas    machinery    first    wild    award    acids    introducing    mainly    novo    vesicles   

Project "ArtifiCell" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITY COLLEGE LONDON 

Organization address
address: GOWER STREET
city: LONDON
postcode: WC1E 6BT
website: n.a.

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country United Kingdom [UK]
 Total cost 3˙000˙000 €
 EC max contribution 3˙000˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2014-ADG
 Funding Scheme ERC-ADG
 Starting year 2015
 Duration (year-month-day) from 2015-09-01   to  2021-08-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITY COLLEGE LONDON UK (LONDON) coordinator 2˙200˙000.00
2    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 800˙000.00

Map

 Project objective

Imagine being able to design into living cells and organisms de novo vesicle transport mechanisms that do not naturally exist? At one level this is a wild-eyed notion of synthetic biology. But we contend that this vision can be approached even today, focusing first on the process of exocytosis, a fundamental process that impacts almost every area of physiology. Enough has now been learned about the natural core machinery (as recognized by the award of the 2013 Nobel Prize in Physiology or Medicine to the PI and others) to take highly innovative physics/engineering- and DNA-based approaches to design synthetic versions of the secretory apparatus that could someday open new avenues in genetic medicine. The central idea is to introduce DNA-based functional equivalents of the core protein machinery that naturally form (coats), target (tethers), and fuse (SNAREs) vesicles. We have already taken first steps by using DNA origami-based templates to produce synthetic phospholipid vesicles and complementary DNA-based tethers to specifically capture these DNA-templated vesicles on targeted bilayers. Others have linked DNA oligonucleotides to trigger vesicle fusion. The next and much more challenging step is to introduce such processes into living cells. We hope to break this barrier, and in the process start a new field of research into “synthetic exocytosis”, by introducing Peptide-Nucleic Acids (PNAs) of tethers and SNAREs to re-direct naturally-produced secretory vesicles to artificially-programmed targets and provide artificially-programmed regulation. PNAs are chosen mainly because they lack the negatively charged phosphate backbones of DNA, and therefore are more readily delivered into the cell across the plasma membrane. Future steps, would include producing the transport vesicles synthetically within the cell by externally supplied origami-based PNA or similar cages, and - much more speculatively - ultimately using encoded DNA and RNAs to provide these functions.

 Publications

year authors and title journal last update
List of publications.
2019 Fabio Manca, Frederic Pincet, Lev Truskinovsky, James E. Rothman, Lionel Foret, Matthieu Caruel
SNARE machinery is optimized for ultrafast fusion
published pages: 2435-2442, ISSN: 0027-8424, DOI: 10.1073/pnas.1820394116
Proceedings of the National Academy of Sciences 116/7 2020-03-11
2019 Paul Heo, Sathish Ramakrishnan, Jeff Coleman, James E. Rothman, Jean‐Baptiste Fleury, Frederic Pincet
Highly Reproducible Physiological Asymmetric Membrane with Freely Diffusing Embedded Proteins in a 3D‐Printed Microfluidic Setup
published pages: 1900725, ISSN: 1613-6810, DOI: 10.1002/smll.201900725
Small 15/21 2020-03-11
2017 Zhao Zhang, Yang Yang, Frederic Pincet, Marc C. Llaguno, Chenxiang Lin
Placing and shaping liposomes with reconfigurable DNA nanocages
published pages: 653-659, ISSN: 1755-4330, DOI: 10.1038/NCHEM.2802
Nature Chemistry 9/7 2019-07-04
2018 Oscar D. Bello, Ouardane Jouannot, Arunima Chaudhuri, Ekaterina Stroeva, Jeff Coleman, Kirill E. Volynski, James E. Rothman, Shyam S. Krishnakumar
Synaptotagmin oligomerization is essential for calcium control of regulated exocytosis
published pages: E7624-E7631, ISSN: 0027-8424, DOI: 10.1073/pnas.1808792115
Proceedings of the National Academy of Sciences 115/32 2019-07-04
2018 Jeff Coleman, Ouardane Jouannot, Sathish K. Ramakrishnan, Maria N. Zanetti, Jing Wang, Vincenzo Salpietro, Henry Houlden, James E. Rothman, Shyam S. Krishnakumar
PRRT2 Regulates Synaptic Fusion by Directly Modulating SNARE Complex Assembly
published pages: 820-831, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2017.12.056
Cell Reports 22/3 2019-07-04
2018 Sathish Ramakrishnan, Andrea Gohlke, Feng Li, Jeff Coleman, Weiming Xu, James E. Rothman, Frederic Pincet
High-Throughput Monitoring of Single Vesicle Fusion Using Freestanding Membranes and Automated Analysis
published pages: 5849-5859, ISSN: 0743-7463, DOI: 10.1021/acs.langmuir.8b00116
Langmuir 34/20 2019-07-04
2018 Michael W. Grome, Zhao Zhang, Frédéric Pincet, Chenxiang Lin
Vesicle Tubulation with Self-Assembling DNA Nanosprings
published pages: 5330-5334, ISSN: 1433-7851, DOI: 10.1002/anie.201800141
Angewandte Chemie International Edition 57/19 2019-07-04

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