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ArtifiCell SIGNED

Synthetic Cell Biology: Designing organelle transport mechanisms

Total Cost €

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EC-Contrib. €

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Partnership

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 ArtifiCell project word cloud

Explore the words cloud of the ArtifiCell project. It provides you a very rough idea of what is the project "ArtifiCell" about.

capture    area    barrier    negatively    phosphate    almost    hope    fusion    avenues    wild    vesicle    introducing    protein    nobel    acids    mainly    core    cells    physiology    exist    idea    prize    fundamental    oligonucleotides    tethers    linked    peptide    transport    cell    naturally    synthetic    impacts    externally    de    versions    someday    imagine    living    innovative    readily    programmed    apparatus    pi    first    lack    snares    contend    biology    rnas    mechanisms    regulation    re    plasma    machinery    origami    direct    eyed    speculatively    membrane    genetic    artificially    supplied    notion    pna    award    secretory    fuse    learned    break    dna    delivered    synthetically    vision    physics    phospholipid    central    2013    complementary    ultimately    chosen    engineering    backbones    introduce    nucleic    bilayers    start    trigger    charged    pnas    medicine    organisms    templated    approached    cages    encoded    novo    natural    equivalents    templates    form    functional    exocytosis    functions    producing    vesicles    coats   

Project "ArtifiCell" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITY COLLEGE LONDON 

Organization address
address: GOWER STREET
city: LONDON
postcode: WC1E 6BT
website: n.a.

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country United Kingdom [UK]
 Total cost 3˙000˙000 €
 EC max contribution 3˙000˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2014-ADG
 Funding Scheme ERC-ADG
 Starting year 2015
 Duration (year-month-day) from 2015-09-01   to  2021-08-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITY COLLEGE LONDON UK (LONDON) coordinator 2˙200˙000.00
2    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 800˙000.00

Map

 Project objective

Imagine being able to design into living cells and organisms de novo vesicle transport mechanisms that do not naturally exist? At one level this is a wild-eyed notion of synthetic biology. But we contend that this vision can be approached even today, focusing first on the process of exocytosis, a fundamental process that impacts almost every area of physiology. Enough has now been learned about the natural core machinery (as recognized by the award of the 2013 Nobel Prize in Physiology or Medicine to the PI and others) to take highly innovative physics/engineering- and DNA-based approaches to design synthetic versions of the secretory apparatus that could someday open new avenues in genetic medicine. The central idea is to introduce DNA-based functional equivalents of the core protein machinery that naturally form (coats), target (tethers), and fuse (SNAREs) vesicles. We have already taken first steps by using DNA origami-based templates to produce synthetic phospholipid vesicles and complementary DNA-based tethers to specifically capture these DNA-templated vesicles on targeted bilayers. Others have linked DNA oligonucleotides to trigger vesicle fusion. The next and much more challenging step is to introduce such processes into living cells. We hope to break this barrier, and in the process start a new field of research into “synthetic exocytosis”, by introducing Peptide-Nucleic Acids (PNAs) of tethers and SNAREs to re-direct naturally-produced secretory vesicles to artificially-programmed targets and provide artificially-programmed regulation. PNAs are chosen mainly because they lack the negatively charged phosphate backbones of DNA, and therefore are more readily delivered into the cell across the plasma membrane. Future steps, would include producing the transport vesicles synthetically within the cell by externally supplied origami-based PNA or similar cages, and - much more speculatively - ultimately using encoded DNA and RNAs to provide these functions.

 Publications

year authors and title journal last update
List of publications.
2019 Fabio Manca, Frederic Pincet, Lev Truskinovsky, James E. Rothman, Lionel Foret, Matthieu Caruel
SNARE machinery is optimized for ultrafast fusion
published pages: 2435-2442, ISSN: 0027-8424, DOI: 10.1073/pnas.1820394116
Proceedings of the National Academy of Sciences 116/7 2020-03-11
2019 Paul Heo, Sathish Ramakrishnan, Jeff Coleman, James E. Rothman, Jean‐Baptiste Fleury, Frederic Pincet
Highly Reproducible Physiological Asymmetric Membrane with Freely Diffusing Embedded Proteins in a 3D‐Printed Microfluidic Setup
published pages: 1900725, ISSN: 1613-6810, DOI: 10.1002/smll.201900725
Small 15/21 2020-03-11
2017 Zhao Zhang, Yang Yang, Frederic Pincet, Marc C. Llaguno, Chenxiang Lin
Placing and shaping liposomes with reconfigurable DNA nanocages
published pages: 653-659, ISSN: 1755-4330, DOI: 10.1038/NCHEM.2802
Nature Chemistry 9/7 2019-07-04
2018 Oscar D. Bello, Ouardane Jouannot, Arunima Chaudhuri, Ekaterina Stroeva, Jeff Coleman, Kirill E. Volynski, James E. Rothman, Shyam S. Krishnakumar
Synaptotagmin oligomerization is essential for calcium control of regulated exocytosis
published pages: E7624-E7631, ISSN: 0027-8424, DOI: 10.1073/pnas.1808792115
Proceedings of the National Academy of Sciences 115/32 2019-07-04
2018 Jeff Coleman, Ouardane Jouannot, Sathish K. Ramakrishnan, Maria N. Zanetti, Jing Wang, Vincenzo Salpietro, Henry Houlden, James E. Rothman, Shyam S. Krishnakumar
PRRT2 Regulates Synaptic Fusion by Directly Modulating SNARE Complex Assembly
published pages: 820-831, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2017.12.056
Cell Reports 22/3 2019-07-04
2018 Sathish Ramakrishnan, Andrea Gohlke, Feng Li, Jeff Coleman, Weiming Xu, James E. Rothman, Frederic Pincet
High-Throughput Monitoring of Single Vesicle Fusion Using Freestanding Membranes and Automated Analysis
published pages: 5849-5859, ISSN: 0743-7463, DOI: 10.1021/acs.langmuir.8b00116
Langmuir 34/20 2019-07-04
2018 Michael W. Grome, Zhao Zhang, Frédéric Pincet, Chenxiang Lin
Vesicle Tubulation with Self-Assembling DNA Nanosprings
published pages: 5330-5334, ISSN: 1433-7851, DOI: 10.1002/anie.201800141
Angewandte Chemie International Edition 57/19 2019-07-04

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