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THAUMECOPHYL

Evolutionary history and ecological adaptations of ammonia oxidizing Thaumarchaeota.

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

THAUMECOPHYL project word cloud

Explore the words cloud of the THAUMECOPHYL project. It provides you a very rough idea of what is the project "THAUMECOPHYL" about.

data molecular genomic taxa greenhouse unknown archaea terrestrial training complete bioinformatics ecological thaumarchaeota species genomes evolutionary prof performing phylogeny cycle scientist marine start metabolism linked diversified trained events first global ways evolution tree despite expertise variety phylum scenario transitions gene aoa transfers metagenomic physiology laboratory ancestor cultivation interdisciplinary sophisticated ecology career losses clade duplications reconstruct edge origin experimental evolve project gasses emergence obtain occurred questions oxidation ancestral give model abundance schleper environments group nature genomics genome minimal scientific plan deemed oxidizing inferred nitrogen skills players metabolic biologists ammonia combination biology

Project "THAUMECOPHYL" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITAT WIEN Organization address address: UNIVERSITATSRING 1 city: WIEN postcode: 1010 website: www.univie.ac.at contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Austria [AT]
Project website	http://genetics-ecology.univie.ac.at/thaumecophyl.html
Total cost	178˙156 €
EC max contribution	178˙156 € (100%)
Programme	1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
Code Call	H2020-MSCA-IF-2015
Funding Scheme	MSCA-IF-EF-ST
Starting year	2016
Duration (year-month-day)	from 2016-04-01 to 2018-03-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITAT WIEN UNIVERSITAT WIEN Organization address address: UNIVERSITATSRING 1 city: WIEN postcode: 1010 website: www.univie.ac.at contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AT (WIEN)	coordinator	178˙156.00

Map

Project objective

Ammonia oxidizing archaea (AOA), a clade of the Thaumarchaeota phylum, diversified in a variety of marine and terrestrial environments. Due to their abundance, AOA are deemed major players in the global cycle of nitrogen. They also produce greenhouse gasses. Despite their ecological importance, the nature and origin of ammonia oxidizing metabolism and the reasons for the ecological success of AOA are still unknown. This project aims at performing the first comprehensive evolutionary and comparative genomic analysis of Thaumarchaeota to identify crucial metabolic and genomic features. Prof. Schleper is a leading scientist in Thaumarchaeota cultivation, genomics and physiology. Metagenomic data produced in her laboratory give now access to genomes of crucial taxa for this project. I will complete these genomes, and analyse all available AOA genomes with a sophisticated model of genome evolution to reconstruct the species tree of Thaumarchaeota and the events (gene duplications, transfers and losses) that occurred along their evolution. The genome of the AOA’s ancestor will be inferred, and the minimal gene set required for ammonia oxidation identified. The sets of evolutionary events and the ancestral genome will be linked to metabolic and ecological transitions to obtain the scenario of ammonia oxidation emergence and of the adaptation of AOA to various environments, thus addressing key questions in the fields of ecology, evolution, and archaea biology. This interdisciplinary project is only possible through the unique combination of my expertise in comparative genomics and molecular phylogeny with the expertise of Prof. Schleper's group, which will result in two-ways transfers of knowledge and skills. Beyond scientific training, I will be trained to project management and project design with experimental biologists. This is crucial for my career, as I plan to start a group at the edge of bioinformatics and experimental biology to study how complex systems evolve.

Publications

List of publications.
year	authors and title	journal	last update
2016	Kerou M, Offre P, Valledor L, Abby SS, Melcher M, Nagler M, Weckwerth W, Schleper C Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers published pages: E7937-E7946, ISSN: 0027-8424, DOI: 10.1073/pnas.1601212113	Proceedings of the National Academy of Sciences 113(49)	2019-07-26

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