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SINGEK SIGNED

Promoting SINgle cell GEnomics to explore the ecology and evolution of hidden microeuKaryotes

Total Cost €

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EC-Contrib. €

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Partnership

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 SINGEK project word cloud

Explore the words cloud of the SINGEK project. It provides you a very rough idea of what is the project "SINGEK" about.

skills    interactions    transferable    function    itn    remarkable    majority    team    secondments    questions    driving    natural    microbial    tools    sequencing    initial    biomedicine    singek    data    consequently    scg    ecosystems    surveys    progress    single    players    stages    components    sorting    perspective    critical    point    retrieve    extends    uncultured    partial    revealed    scientists    highlighted    qualified    genome    highest    escaped    drive    had    transcriptomics    diversity    cycling    gene    cell    unparalleled    individual    train    missing    trophic    generation    biotechnology    environments    first    full    ecological    innovation    genomic    community    primary    life    fragmented    microbes    environment    training    local    parasitism    environmental    cellular    ready    establishing    grazing    expertise    tree    ignorance    biogeochemical    previously    genomics    annotation    view    time    microeukaryotic    recovered    promises    workshops    connected    evolutionary    limiting    network    career    giving    functions    detection    microeukaryotes    evolution    successful    ecology    eukaryotic   

Project "SINGEK" data sheet

The following table provides information about the project.

Coordinator
AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS 

Organization address
address: CALLE SERRANO 117
city: MADRID
postcode: 28006
website: http://www.csic.es

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Spain [ES]
 Project website http://www.singek.eu
 Total cost 3˙889˙393 €
 EC max contribution 3˙889˙393 € (100%)
 Programme 1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
 Code Call H2020-MSCA-ITN-2015
 Funding Scheme MSCA-ITN-ETN
 Starting year 2016
 Duration (year-month-day) from 2016-01-01   to  2020-05-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS ES (MADRID) coordinator 881˙326.00
2    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 788˙626.00
3    THE UNIVERSITY OF EXETER UK (EXETER) participant 546˙575.00
4    UPPSALA UNIVERSITET SE (UPPSALA) participant 527˙318.00
5    THE UNIVERSITY OF LIVERPOOL UK (LIVERPOOL) participant 273˙287.00
6    LUNDS UNIVERSITET SE (LUND) participant 263˙659.00
7    VIB BE (ZWIJNAARDE - GENT) participant 250˙560.00
8    FUNDACIO CENTRE DE REGULACIO GENOMICA ES (BARCELONA) participant 247˙872.00
9    ASCIDEA COMPUTATIONAL BIOLOGY SOLUTIONS SL ES (BARCELONA) participant 110˙165.00
10    COMMISSARIAT A L ENERGIE ATOMIQUE ET AUX ENERGIES ALTERNATIVES FR (PARIS 15) partner 0.00
11    FLUIGENT SA FR (LE KREMLIN-BICETRE) partner 0.00
12    GREENSEA SAS FR (Saint Beauzire) partner 0.00
13    MUSEUM NATIONAL D'HISTOIRE NATURELLE FR (PARIS) partner 0.00
14    Plàncton, Divulgació I Serveis Marins S.C.P. ES (L'Ametlla de Mar) partner 0.00
15    THE SECRETARY OF STATE FOR ENVIRONMENT, FOOD AND RURAL AFFAIRS UK (LONDON) partner 0.00
16    WriteScience DE (Grimma OT Döben) partner 0.00

Map

 Project objective

Environmental microbial surveys have revealed a remarkable diversity of microeukaryotic life in most ecosystems, the majority of which had previously escaped detection. From an ecological point of view this work highlighted our ignorance of critical microbial players in natural environmental processes, including primary production, biogeochemical cycling and trophic interactions such as parasitism and grazing. Consequently, our understanding of community function is partial, limiting our ability to study environmental change. While, from an evolutionary perspective, we are missing major components of the Tree of Life giving rise to a fragmented understanding of how major cellular functions have evolved. Single cell genomics (SCG), including single cell transcriptomics, is an emerging technology that has the potential to retrieve genomic information from individual uncultured microbes recovered directly from natural environments and promises to provide new tools to investigate microeukaryotes in unparalleled detail. The aim of this ITN is therefore to train a new generation of scientists with the highest expertise, in SCG, from the initial stages of cell sorting to genome sequencing and gene annotation, to the full exploitation of the data obtained. Such progress will allow the European research community for the first time to address critical ecological and evolutionary questions. SINGEK will drive training through research by both local and network-wide activities, secondments, and workshops, and by establishing an environment that extends far beyond each partner team. This training environment will also provide the transferable skills essential for successful career development. This network of well connected and highly qualified scientists with expertise in eukaryotic SCG will be ready to implement this technology beyond ecology and evolution to other fields such as biomedicine or biotechnology driving innovation across the EU.

 Deliverables

List of deliverables.
Inventories of microeukaryotic diversity in contrasted ecosystems, including novelty Other 2020-01-14 16:52:52
Pipelines for de novo assembly of Illumina data into contigs depending on the sample Other 2019-10-08 17:02:53
A procedure to check the quality of the initial reads and the large assemblies Other 2019-10-08 17:03:03
Scientific Conference: European SCG Meeting Other 2019-10-08 17:02:49
Pipelines for gene detection and annotation of novel taxa Other 2019-05-27 10:26:59
Popularizations events Websites, patent fillings, videos etc. 2019-05-27 10:26:48
Reconstruction of functional and metabolic pathways of several eukaryotes Other 2019-05-27 10:27:02
An optimized procedure for genome or transcriptome amplification from single cells Other 2019-05-27 10:26:52
An optimized procedure for single cell sorting Other 2019-05-27 10:26:52
The SINGEK Web page Websites, patent fillings, videos etc. 2019-05-24 23:31:28

Take a look to the deliverables list in detail:  detailed list of SINGEK deliverables.

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The information about "SINGEK" are provided by the European Opendata Portal: CORDIS opendata.

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