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Opendata, web and dolomites

SINGEK SIGNED

Promoting SINgle cell GEnomics to explore the ecology and evolution of hidden microeuKaryotes

Total Cost €

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EC-Contrib. €

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Partnership

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Outcomes and
results

SINGEK project word cloud

Explore the words cloud of the SINGEK project. It provides you a very rough idea of what is the project "SINGEK" about.

life progress tree team grazing biotechnology highlighted environmental escaped limiting consequently secondments parasitism majority perspective genomics itn microbes environment individual highest cycling view missing evolution workshops sequencing cellular ecology biomedicine players recovered successful innovation transcriptomics scientists microeukaryotic tools environments critical stages primary functions skills remarkable data point giving questions full evolutionary function annotation eukaryotic genome had microeukaryotes initial previously establishing microbial first partial driving promises diversity natural sorting uncultured cell interactions community ignorance scg detection unparalleled ecological network single expertise retrieve fragmented ready biogeochemical ecosystems time local connected trophic genomic training surveys singek gene components transferable drive career revealed qualified extends train generation

Project "SINGEK" data sheet

The following table provides information about the project.

Coordinator	AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS Organization address address: CALLE SERRANO 117 city: MADRID postcode: 28006 website: http://www.csic.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Spain [ES]
Project website	http://www.singek.eu
Total cost	3˙889˙393 €
EC max contribution	3˙889˙393 € (100%)
Programme	1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
Code Call	H2020-MSCA-ITN-2015
Funding Scheme	MSCA-ITN-ETN
Starting year	2016
Duration (year-month-day)	from 2016-01-01 to 2020-05-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS Organization address address: CALLE SERRANO 117 city: MADRID postcode: 28006 website: http://www.csic.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (MADRID)	coordinator	881˙326.00
2	CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS Organization address address: RUE MICHEL ANGE 3 city: PARIS postcode: 75794 website: www.cnrs.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	788˙626.00
3	THE UNIVERSITY OF EXETER THE UNIVERSITY OF EXETER Organization address address: THE QUEEN'S DRIVE NORTHCOTE HOUSE city: EXETER postcode: EX4 4QJ website: www.ex.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EXETER)	participant	546˙575.00
4	UPPSALA UNIVERSITET UPPSALA UNIVERSITET Organization address address: VON KRAEMERS ALLE 4 city: UPPSALA postcode: 751 05 website: www.uu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (UPPSALA)	participant	527˙318.00
5	THE UNIVERSITY OF LIVERPOOL THE UNIVERSITY OF LIVERPOOL Organization address address: BROWNLOW HILL 765 FOUNDATION BUILDING city: LIVERPOOL postcode: L69 7ZX website: www.liverpool.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LIVERPOOL)	participant	273˙287.00
6	LUNDS UNIVERSITET LUNDS UNIVERSITET Organization address address: Paradisgatan 5c city: LUND postcode: 22100 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (LUND)	participant	263˙659.00
7	VIB VIB Organization address address: RIJVISSCHESTRAAT 120 city: ZWIJNAARDE - GENT postcode: 9052 website: www.vib.be contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (ZWIJNAARDE - GENT)	participant	250˙560.00
8	FUNDACIO CENTRE DE REGULACIO GENOMICA FUNDACIO CENTRE DE REGULACIO GENOMICA Organization address address: CARRER DOCTOR AIGUADER 88 city: BARCELONA postcode: 8003 website: www.crg.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	247˙872.00
9	ASCIDEA COMPUTATIONAL BIOLOGY SOLUTIONS SL ASCIDEA COMPUTATIONAL BIOLOGY SOLUTIONS SL Organization address address: CL ALMOGAVERS NUM 165 city: BARCELONA postcode: 8018 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	110˙165.00
10	COMMISSARIAT A L ENERGIE ATOMIQUE ET AUX ENERGIES ALTERNATIVES COMMISSARIAT A L ENERGIE ATOMIQUE ET AUX ENERGIES ALTERNATIVES Organization address address: RUE LEBLANC 25 city: PARIS 15 postcode: 75015 website: www.cea.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS 15)	partner	0.00
11	FLUIGENT SA FLUIGENT SA Organization address address: 57-77 AVENUE DE FONTAINEBLEAU city: LE KREMLIN-BICETRE postcode: 94270 website: www.fluigent.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (LE KREMLIN-BICETRE)	partner	0.00
12	GREENSEA SAS GREENSEA SAS Organization address address: Biopole Clermont Limagne city: Saint Beauzire postcode: 63360 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (Saint Beauzire)	partner	0.00
13	MUSEUM NATIONAL D'HISTOIRE NATURELLE MUSEUM NATIONAL D'HISTOIRE NATURELLE Organization address address: RUE CUVIER 57 city: PARIS postcode: 75005 website: http://www.mnhn.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	partner	0.00
14	Plàncton, Divulgació I Serveis Marins S.C.P. Plàncton, Divulgació I Serveis Marins S.C.P. Organization address address: Cambrils, 2 city: L'Ametlla de Mar postcode: 43860 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (L'Ametlla de Mar)	partner	0.00
15	THE SECRETARY OF STATE FOR ENVIRONMENT, FOOD AND RURAL AFFAIRS THE SECRETARY OF STATE FOR ENVIRONMENT, FOOD AND RURAL AFFAIRS Organization address address: Area 1A, Nobel House, Smith Square 17 city: LONDON postcode: SW1P 3JR website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LONDON)	partner	0.00
16	WriteScience WriteScience Organization address address: Kirchberg 17 city: Grimma OT Döben postcode: 4668 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (Grimma OT Döben)	partner	0.00

Map

Project objective

Environmental microbial surveys have revealed a remarkable diversity of microeukaryotic life in most ecosystems, the majority of which had previously escaped detection. From an ecological point of view this work highlighted our ignorance of critical microbial players in natural environmental processes, including primary production, biogeochemical cycling and trophic interactions such as parasitism and grazing. Consequently, our understanding of community function is partial, limiting our ability to study environmental change. While, from an evolutionary perspective, we are missing major components of the Tree of Life giving rise to a fragmented understanding of how major cellular functions have evolved. Single cell genomics (SCG), including single cell transcriptomics, is an emerging technology that has the potential to retrieve genomic information from individual uncultured microbes recovered directly from natural environments and promises to provide new tools to investigate microeukaryotes in unparalleled detail. The aim of this ITN is therefore to train a new generation of scientists with the highest expertise, in SCG, from the initial stages of cell sorting to genome sequencing and gene annotation, to the full exploitation of the data obtained. Such progress will allow the European research community for the first time to address critical ecological and evolutionary questions. SINGEK will drive training through research by both local and network-wide activities, secondments, and workshops, and by establishing an environment that extends far beyond each partner team. This training environment will also provide the transferable skills essential for successful career development. This network of well connected and highly qualified scientists with expertise in eukaryotic SCG will be ready to implement this technology beyond ecology and evolution to other fields such as biomedicine or biotechnology driving innovation across the EU.

Deliverables

List of deliverables.
Inventories of microeukaryotic diversity in contrasted ecosystems, including novelty	Other	2020-01-14 16:52:52
Pipelines for de novo assembly of Illumina data into contigs depending on the sample	Other	2019-10-08 17:02:53
A procedure to check the quality of the initial reads and the large assemblies	Other	2019-10-08 17:03:03
Scientific Conference: European SCG Meeting	Other	2019-10-08 17:02:49
Pipelines for gene detection and annotation of novel taxa	Other	2019-05-27 10:26:59
Popularizations events	Websites, patent fillings, videos etc.	2019-05-27 10:26:48
Reconstruction of functional and metabolic pathways of several eukaryotes	Other	2019-05-27 10:27:02
An optimized procedure for genome or transcriptome amplification from single cells	Other	2019-05-27 10:26:52
An optimized procedure for single cell sorting	Other	2019-05-27 10:26:52
The SINGEK Web page	Websites, patent fillings, videos etc.	2019-05-24 23:31:28

Take a look to the deliverables list in detail: detailed list of SINGEK deliverables.

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The information about "SINGEK" are provided by the European Opendata Portal: CORDIS opendata.

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