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MolMap SIGNED

From Tissues to Single Molecules: High Content in Situ Super-Resolution imaging with DNA-PAINT

Total Cost €

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EC-Contrib. €

0

Partnership

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 MolMap project word cloud

Explore the words cloud of the MolMap project. It provides you a very rough idea of what is the project "MolMap" about.

cascades    resolution    disease    differentiation    limited    relevance    nanotechnology    combination    immense    progression    spatial    cellular    localization    positively    powerful    microscope    clinical    technological    single    fluorescence    exploring    disruptive    sheet    components    quantitative    spectrometry    cell    tool    characterization    proteomics    microenvironment    imaging    aptamer    protein    transformative    tissue    nucleic    transcriptomics    interactions    question    revolutionize    lattice    paint    capability    stimuli    localize    biological    impedes    dna    either    platform    molecular    networks    light    understand    acquisition    throughput    advent    acids    quantify    push    technically    abundance    despite    automated    proteins    unraveling    image    health    multitude    labeling    answer    interplay    network    molecule    cells    basis    nanobody    super    tissues    biomolecules    tools    highest    multiplexed    multiplexing    issue    signaling    microscopy    first    acid    barcoding    mutual    lack    envelope    techniques    deep    once    exchange    pressing    mass   

Project "MolMap" data sheet

The following table provides information about the project.

Coordinator
LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN 

Organization address
address: GESCHWISTER SCHOLL PLATZ 1
city: MUENCHEN
postcode: 80539
website: www.uni-muenchen.de

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Germany [DE]
 Total cost 1˙695˙000 €
 EC max contribution 1˙695˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2015-STG
 Funding Scheme ERC-STG
 Starting year 2016
 Duration (year-month-day) from 2016-04-01   to  2021-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN DE (MUENCHEN) coordinator 1˙695˙000.00

Map

 Project objective

Fluorescence microscopy is a powerful tool for exploring biomolecules in cells and tissues, especially with the advent of super-resolution techniques. To better understand key processes such as cell differentiation and disease progression, it is crucial to investigate the abundance, localization and mutual interactions of crucial cellular components such as nucleic acids and proteins. Unraveling their complex interplay in whole signaling networks is necessary to investigate cellular responses to stimuli. However, currently available characterization techniques are either limited by low multiplexing capability (e.g. fluorescence microscopy) or lack localization information (e.g. mass spectrometry). Despite the immense biological and clinical relevance of understanding network-wide changes, the lack of a technological platform to image, identify and quantify a multitude of key protein networks at high spatial resolution in tissues impedes our understanding of the molecular basis of health and disease. I aim to solve this pressing issue and revolutionize fluorescence microscopy using tools from DNA Nanotechnology with transformative potential to positively answer the question: Can we localize and identify each protein or nucleic acid molecule in a complex tissue microenvironment? The approach is based on my recently developed DNA- and Exchange-PAINT techniques. To push the envelope of what’s technically possible I will first build a lattice light-sheet microscope for deep tissue high throughput DNA-PAINT imaging. Second, I will develop novel nanobody- and aptamer-based labeling approaches in combination with molecular barcoding and automated multiplexed image acquisition and processing. With these disruptive and transformative tools, I will investigate whole signaling cascades at once in single cells and whole tissues, thus enabling quantitative imaging transcriptomics and proteomics with highest spatial resolution.

 Publications

year authors and title journal last update
List of publications.
2017 Sarit S. Agasti, Yu Wang, Florian Schueder, Aishwarya Sukumar, Ralf Jungmann, Peng Yin
DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging
published pages: 3080-3091, ISSN: 2041-6520, DOI: 10.1039/c6sc05420j
Chemical Science 8/4 2019-06-19
2018 Maximilian T. Strauss, Florian Schueder, Daniel Haas, Philipp C. Nickels, Ralf Jungmann
Quantifying absolute addressability in DNA origami with molecular resolution
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-018-04031-z
Nature Communications 9/1 2019-06-19
2017 Florian Schueder, Maximilian T. Strauss, David Hoerl, Joerg Schnitzbauer, Thomas Schlichthaerle, Sebastian Strauss, Peng Yin, Hartmann Harz, Heinrich Leonhardt, Ralf Jungmann
Universal Super-Resolution Multiplexing by DNA Exchange
published pages: 4052-4055, ISSN: 1433-7851, DOI: 10.1002/anie.201611729
Angewandte Chemie International Edition 56/14 2019-06-19
2018 Thomas Schlichthaerle, Alexandra S. Eklund, Florian Schueder, Maximilian T. Strauss, Christian Tiede, Alistair Curd, Jonas Ries, Michelle Peckham, Darren C. Tomlinson, Ralf Jungmann
Site-Specific Labeling of Affimers for DNA-PAINT Microscopy
published pages: 11060-11063, ISSN: 1433-7851, DOI: 10.1002/anie.201804020
Angewandte Chemie International Edition 57/34 2019-04-18
2018 Sebastian Strauss, Philipp C. Nickels, Maximilian T. Strauss, Vilma Jimenez Sabinina, Jan Ellenberg, Jeffrey D. Carter, Shashi Gupta, Nebojsa Janjic, Ralf Jungmann
Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging
published pages: 685-688, ISSN: 1548-7091, DOI: 10.1038/s41592-018-0105-0
Nature Methods 15/9 2019-04-18
2017 Alexander Auer, Maximilian T. Strauss, Thomas Schlichthaerle, Ralf Jungmann
Fast, Background-Free DNA-PAINT Imaging Using FRET-Based Probes
published pages: 6428-6434, ISSN: 1530-6984, DOI: 10.1021/acs.nanolett.7b03425
Nano Letters 17/10 2019-04-18
2017 Johannes B. Woehrstein, Maximilian T. Strauss, Luvena L. Ong, Bryan Wei, David Y. Zhang, Ralf Jungmann, Peng Yin
Sub–100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA
published pages: e1602128, ISSN: 2375-2548, DOI: 10.1126/sciadv.1602128
Science Advances 3/6 2019-04-18
2018 Jonas Mücksch, Philipp Blumhardt, Maximilian T. Strauss, Eugene P. Petrov, Ralf Jungmann, Petra Schwille
Quantifying Reversible Surface Binding via Surface-Integrated Fluorescence Correlation Spectroscopy
published pages: 3185-3192, ISSN: 1530-6984, DOI: 10.1021/acs.nanolett.8b00875
Nano Letters 18/5 2019-04-18
2017 Florian Schueder, Juanita Lara-Gutiérrez, Brian J. Beliveau, Sinem K. Saka, Hiroshi M. Sasaki, Johannes B. Woehrstein, Maximilian T. Strauss, Heinrich Grabmayr, Peng Yin, Ralf Jungmann
Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-017-02028-8
Nature Communications 8/1 2019-04-18

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