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3DviralRNA
Structural and functional characterization of large viral and human non-coding RNA motifs involved in HIV infection
Total Cost €
0EC-Contrib. €
0Partnership
0Views
03DviralRNA project word cloud
Explore the words cloud of the 3DviralRNA project. It provides you a very rough idea of what is the project "3DviralRNA" about.
translation
infection
viral
enzymes
rna
deaths
encompasses
tar
conserved
protein
interactions
frameshifting
vitro
epigenetic
questions
pathogenesis
structure
employ
enrich
synthesis
alter
lt
450
export
action
chromatin
biochemical
suggesting
domain
hotair
mechanisms
favoring
steadily
3d
strains
530
splicing
functional
structural
gene
expand
fundamental
nt
complemented
structures
packaging
genes
nuclear
domains
interacts
2mi
details
ways
coding
worldwide
host
players
cell
400
200
therapies
resistance
unravel
eradicating
11
impossibility
latent
genomic
lncrnas
remodeling
infectivity
infections
expression
antiretroviral
regulates
pol
biology
prc1
partly
revealing
regulate
rates
unprecedented
human
correct
silencing
motifs
unknown
polycomb
genome
viruses
larger
potentially
rnas
virus
gag
hiv
prc2
vivo
induce
cellular
insights
latency
assays
motif
opening
reveal
proteins
progression
rre
complexity
molecular
gt
Project "3DviralRNA" data sheet
The following table provides information about the project.
| Coordinator |
EUROPEAN MOLECULAR BIOLOGY LABORATORY
Organization address contact info |
| Coordinator Country | Germany [DE] |
| Total cost | 159˙460 € |
| EC max contribution | 159˙460 € (100%) |
| Programme |
1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility) |
| Code Call | H2020-MSCA-IF-2016 |
| Funding Scheme | MSCA-IF-EF-ST |
| Starting year | 2018 |
| Duration (year-month-day) | from 2018-09-01 to 2020-08-31 |
Partnership
Take a look of project's partnership.
| # | ||||
|---|---|---|---|---|
| 1 | EUROPEAN MOLECULAR BIOLOGY LABORATORY | DE (HEIDELBERG) | coordinator | 159˙460.00 |
Map
Project objective
HIV infections cause 1.2Mi deaths/year worldwide at steadily-increasing rates, partly because of antiretroviral resistance and the impossibility of eradicating latent viruses. To expand our understanding of HIV pathogenesis, we need to unravel all molecular mechanisms involved in HIV progression. Large viral and human RNAs are emerging as key players in HIV infection. To characterize such RNAs, I will employ an integrated structural biology approach complemented by biochemical and functional assays in vitro and in vivo and I will address two fundamental questions: 1. How does the structure of HIV genomic RNA regulate HIV infectivity? HIV genomic RNA regulates nuclear export, packaging, splicing, and translation of viral proteins. 3D structures are known for short motifs (<200 nt), e.g. TAR and RRE. Such motifs are part of 11 larger domains (>400 nt), whose structures are unknown but conserved across HIV strains suggesting functional importance. We will study domain 2 (450 nt), which encompasses the gag-pol frameshifting motif and is crucial for correct protein synthesis. Our work will offer unprecedented insights into the structural complexity of the genome of an RNA virus. 2. How does the structure of human long non-coding RNAs (lncRNAs) affect the host-cell response to HIV infection? HIV infections alter expression of human lncRNAs, e.g. HOTAIR, which regulate Polycomb chromatin remodeling enzymes, e.g. PRC1/PRC2, favoring epigenetic silencing and latency of HIV genes. Interactions between HOTAIR and PRC1/PRC2 are not well characterized at the molecular level. We will study HOTAIR domain 1 (530 nt), which interacts with PRC1/PRC2 and regulates their cellular action. Such work will reveal novel mechanisms of epigenetic gene-silencing that induce HIV latency. By revealing molecular details of HIV and human RNAs, our study will enrich our understanding of HIV infectivity, potentially opening new ways for future therapies against RNA viruses.
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