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EpiTrack SIGNED

Single-cell temporal tracking of epigenetic DNA marks

Total Cost €

EC-Contrib. €

Partnership

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EpiTrack project word cloud

Explore the words cloud of the EpiTrack project. It provides you a very rough idea of what is the project "EpiTrack" about.

modification fascinating variability sam gene global dramatic adenosylmethionine plasticity regulation tagging marks analog mechanistic vivo barcoding metabolically resolved cells play super govern precise resolution profiling prevalent imaging decade horizons throughput epigenetic integration microdroplet embryonic methyl methyltransferases differentiation genomic individual transfer chemical events roles mammalian innovative groups dna stage neural time disease whereby cell modifications fertilization permit cofactor over mouse pulse mammals unprecedented phenomena bridge expression followed deposited reprogramming extensively view patterns give centre questions obscure massive single occurs mapping epigenomic reinstatement dynamics engineer methylation sites enzymatic lineages human experimental gap dnmts answered cellular

Project "EpiTrack" data sheet

The following table provides information about the project.

Coordinator	VILNIAUS UNIVERSITETAS Organization address address: UNIVERSITETO G. 3 city: VILNIUS postcode: 1513 website: http://www.vu.lt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Lithuania [LT]
Total cost	2˙499˙875 €
EC max contribution	2˙499˙875 € (100%)
Programme	1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
Code Call	ERC-2016-ADG
Funding Scheme	ERC-ADG
Starting year	2017
Duration (year-month-day)	from 2017-09-01 to 2022-08-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	VILNIAUS UNIVERSITETAS VILNIAUS UNIVERSITETAS Organization address address: UNIVERSITETO G. 3 city: VILNIUS postcode: 1513 website: http://www.vu.lt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	LT (VILNIUS)	coordinator	2˙499˙875.00

Map

Project objective

Over the past decade, epigenetic phenomena have taken centre stage in our understanding of gene regulation, cellular differentiation and human disease. DNA methylation is a prevalent epigenetic modification in mammals, which is brought about by enzymatic transfer of methyl groups from the S-adenosylmethionine (SAM) cofactor by three known DNA methyltransferases (DNMTs). The most dramatic epigenomic reprogramming in mammalian development occurs after fertilization, whereby a global loss of DNA methylation is followed by massive reinstatement of new methylation patterns, different for each cell type. Although DNA methylation has been extensively investigated, key mechanistic aspects of these fascinating events remain obscure. The goal of this proposal is to bridge the gap in our understanding of how the genomic methylation patterns are established and how they govern cell plasticity and variability during differentiation and development. These questions could only be answered by precise determination of where and when methylation marks are deposited by the individual DNMTs, and how these methylation marks affect gene expression. To achieve this ambitious goal, we will metabolically engineer mouse cells to permit SAM analog-based chemical pulse-tagging of their methylation sites in vivo. We will then advance profiling of DNA modifications to the single cell level via innovative integration of microdroplet-based barcoding, precise genomic mapping and super-resolution imaging. Using this unique experimental system we will determine, with unprecedented detail and throughput, the dynamics and variability of DNA methylation and gene expression patterns during differentiation of mouse embryonic cells to neural and other lineages. This project will give a comprehensive, time-resolved view of the roles that the DNMTs play in mammalian development, which will open new horizons in epigenomic research and will advance our understanding of human development and disease.

Publications

List of publications.
year	authors and title	journal	last update
2020	Povilas Gibas, Milda NarmontÄ—, Zdislav StaÅ¡evskij, Juozas GordeviÄius, Saulius KlimaÅ¡auskas, Edita KriukienÄ— Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing published pages: e3000684, ISSN: 1544-9173, DOI: 10.1371/journal.pbio.3000684	PLOS Biology 18	2020-04-15
2018	Milda MickutÄ—, Milda NainytÄ—, Lina VasiliauskaitÄ—, Alexandra Plotnikova, Viktoras MaseviÄius, Saulius KlimaÅ¡auskas, Giedrius Vilkaitis Animal Hen1 2â€²-O-methyltransferases as tools for 3â€²-terminal functionalization and labelling of single-stranded RNAs published pages: e104-e104, ISSN: 0305-1048, DOI: 10.1093/nar/gky514	Nucleic Acids Research 46/17	2019-04-18
2019	Saulius KlimaÅ¡auskas, Linas MaÅ¾utis Editorial overview: Current advances in analytical biotechnology: from single molecules to whole organisms published pages: , ISSN: 0958-1669, DOI: 10.1016/j.copbio.2018.12.006	Current Opinion in Biotechnology	2019-02-28
2019	MiglÄ— TomkuvienÄ—, Milda MickutÄ—, Giedrius Vilkaitis, Saulius KlimaÅ¡auskas Repurposing enzymatic transferase reactions for targeted labeling and analysis of DNA and RNA published pages: 114-123, ISSN: 0958-1669, DOI: 10.1016/j.copbio.2018.09.008	Current Opinion in Biotechnology 55	2019-02-12

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The information about "EPITRACK" are provided by the European Opendata Portal: CORDIS opendata.