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ComPat

Computing Patterns for High Performance Multiscale Computing

Total Cost €

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EC-Contrib. €

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Partnership

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 ComPat project word cloud

Explore the words cloud of the ComPat project. It provides you a very rough idea of what is the project "ComPat" about.

exascale    time    complexity    scalability    standards    realise    transform    algorithms    nine    limitation    fidelity    reliably    handling    empowers    unprecedented    world    interacting    viability    scalable    stack    demonstrated    posed    load    energy    balancing    limits    despite    tera    modellers    discoveries    computing    promise    customized    extreme    producing    predictive    simulate    contemporary    limited    predictions    experimental    physical    road    scientific    science    implementing    efficiency    facility    performance    grand    ready    ambition    software    provision    consumption    heterogeneous    phenomena    petascale    lift    decades    scales    accurately    length    robustness    scenarios    patterns    simulations    reaching    data    models    pave    run    supercomputers    reusable    resiliency    capability    last    progress    tolerance    optimise    pan    environment    multiscale    span    hierarchies    fault    computer    ubiquitous    architectures   

Project "ComPat" data sheet

The following table provides information about the project.

Coordinator
UNIVERSITEIT VAN AMSTERDAM 

Organization address
address: SPUI 21
city: AMSTERDAM
postcode: 1012WX
website: www.uva.nl

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Netherlands [NL]
 Project website http://www.compatproject.eu
 Total cost 4˙122˙864 €
 EC max contribution 3˙942˙885 € (96%)
 Programme 1. H2020-EU.1.2.2. (FET Proactive)
 Code Call H2020-FETHPC-2014
 Funding Scheme RIA
 Starting year 2015
 Duration (year-month-day) from 2015-10-01   to  2018-09-30

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UNIVERSITEIT VAN AMSTERDAM NL (AMSTERDAM) coordinator 754˙000.00
2    UNIVERSITY COLLEGE LONDON UK (LONDON) participant 603˙125.00
3    INSTYTUT CHEMII BIOORGANICZNEJ POLSKIEJ AKADEMII NAUK PL (POZNAN) participant 435˙375.00
4    BAYERISCHE AKADEMIE DER WISSENSCHAFTEN DE (MUENCHEN) participant 423˙375.00
5    MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV DE (MUENCHEN) participant 413˙625.00
6    UNIVERSITEIT LEIDEN NL (LEIDEN) participant 370˙710.00
7    ARM LIMITED UK (CAMBRIDGE) participant 357˙643.00
8    UNITED KINGDOM RESEARCH AND INNOVATION UK (SWINDON) participant 346˙750.00
9    CBK SCI CON LIMITED UK (London) participant 128˙125.00
10    ALLINEA SOFTWARE LIMITED UK (WARWICK) participant 110˙156.00
11    BRUNEL UNIVERSITY LONDON UK (UXBRIDGE) participant 0.00
12    ITMO UNIVERSITY RU (ST PETERSBURG) participant 0.00
13    SCIENCE AND TECHNOLOGY FACILITIES COUNCIL UK (SWINDON) participant 0.00

Map

 Project objective

Multiscale phenomena are ubiquitous and they are the key to understanding the complexity of our world. Despite the significant progress achieved through computer simulations over the last decades, we are still limited in our capability to accurately and reliably simulate hierarchies of interacting multiscale physical processes that span a wide range of time and length scales, thus quickly reaching the limits of contemporary high performance computing at the tera- and petascale. Exascale supercomputers promise to lift this limitation, and in this project we will develop multiscale computing algorithms capable of producing high-fidelity scientific results and scalable to exascale computing systems. Our main objective is to develop generic and reusable High Performance Multiscale Computing algorithms that will address the exascale challenges posed by heterogeneous architectures and will enable us to run multiscale applications with extreme data requirements while achieving scalability, robustness, resiliency, and energy efficiency. Our approach is based on generic multiscale computing patterns that allow us to implement customized algorithms to optimise load balancing, data handling, fault tolerance and energy consumption under generic exascale application scenarios. We will realise an experimental execution environment on our pan-European facility, which will be used to measure performance characteristics and develop models that can provide reliable performance predictions for emerging and future exascale architectures. The viability of our approach will be demonstrated by implementing nine grand challenge applications which are exascale-ready and pave the road to unprecedented scientific discoveries. Our ambition is to establish new standards for multiscale computing at exascale, and provision a robust and reliable software technology stack that empowers multiscale modellers to transform computer simulations into predictive science.

 Deliverables

List of deliverables.
Detailed Dissemination Action plan Documents, reports 2019-05-20 13:13:25
First Report on Multiscale Computing Patterns and Algorithms Documents, reports 2019-05-20 13:13:25
Final Report on Multiscale Computing Patterns, including their Performance Documents, reports 2019-05-20 13:13:25
Final report on the Experimental Execution Environment Documents, reports 2019-05-20 13:13:26
Third Dissemination Report Documents, reports 2019-05-20 13:13:26
Report on Instantiating Computing Patterns and performance measurements and prediction of HPMC Application Documents, reports 2019-05-20 13:13:25
Final report on high level tools, including performance profiling and modelling Documents, reports 2019-05-20 13:13:26
Report on integration of ComPat services with multiscale coupling libraries and patterns Documents, reports 2019-05-20 13:13:26
First Dissemination Report Documents, reports 2019-05-31 16:42:38
Report on Existing Software Suitability and Adaptation Documents, reports 2019-05-31 16:42:33
Report and software on design of tools and required actions to support performance tools for multiscale Documents, reports 2019-05-31 16:42:34
Report on Application Software Readiness Documents, reports 2019-05-31 16:42:38
Report on the assessment of operational procedures and definition of the ComPat operational model Documents, reports 2019-05-31 16:42:37
Quality Assurance Plan Documents, reports 2019-05-31 16:42:39
Project Handbook Documents, reports 2019-05-31 16:42:38
First Report on ComPat middleware services Documents, reports 2019-05-31 16:42:24
First progress report on the Experimental Execution Environment Documents, reports 2019-05-31 16:42:25
Interim Report on Instantiating Computing Patterns for HPMC Applications Documents, reports 2019-05-31 16:42:19
First Report on status of performance profiling of multiscale simulations Documents, reports 2019-05-31 16:42:15
Architecture of the ComPat system Documents, reports 2019-05-31 16:42:40
Second Dissemination Report Documents, reports 2019-05-31 16:42:29

Take a look to the deliverables list in detail:  detailed list of ComPat deliverables.

 Publications

year authors and title journal last update
List of publications.
2018 V. Jancauskas, T. Piontek, P. Kopta, B. Bosak
Predicting Queue Wait Time Probabilities for Multi-Scale Computing
published pages: , ISSN: , DOI:
Philosophical Transactions of the Royal Society 2019-05-20
2018 M. Vassaux, R. Richardson, P. V. Coveney
The heterogeneous multiscale method applied to inelastic polymer mechanics
published pages: , ISSN: , DOI: 10.1098/rsta.2018.0150
2019-05-20
2016 Inti Pelupessy, Ben van Werkhoven, Arjen van Elteren, Jan Viebahn, Adam Candy, Simon Portegies Zwart, Henk Dijkstra
The Oceanographic Multipurpose SoftwareEnvironment
published pages: 1-36, ISSN: 1991-962X, DOI: 10.5194/gmd-2016-178
Geoscientific Model Development Discussions 2019-05-20
2017 Gábor Zavodszky, Britt van Rooij, Victor Azizi, Saad Alowayyed, Alfons Hoekstra
Hemocell: a high-performance microscopic cellular library
published pages: 159-165, ISSN: 1877-0509, DOI: 10.1016/j.procs.2017.05.084
Procedia Computer Science 108 2019-05-20
2016 Alex Rimoldi, Simon Portegies Zwart, Elena Maria Rossi
Simulations of stripped core-collapse supernovae in close binaries
published pages: , ISSN: 2197-7909, DOI: 10.1186/s40668-016-0015-4
Computational Astrophysics and Cosmology 3/1 2019-05-20
2018 D. Groen, J. Knap, P. Neumann, D. Suleimenova, L. Veen, K. Leiter
Mastering the scales: A survey on the benefits of multiscale computing software
published pages: , ISSN: , DOI: 10.1098/rsta.2018.0147
Philosophical Transactions A: Mathematical, Physical and Engineering Sciences 2019-05-20
2018 N. T. Chan, D. Suleimenova, D. Bell, D. Groen
Modelling Refugees Escaping Violent Events: A Feasibility Study From An Input Data Perspective
published pages: , ISSN: , DOI:
Proceedings of the Operational Research Society Simulation Workshop 2018 2019-05-20
2018 D. Groen
Development of a multiscale simulation approach for forced migration
published pages: , ISSN: , DOI:
ICCS 2018, Springer Lecture Notes in Computer Science (LNCS) 2019-05-20
2016 Peter V. Coveney, Shunzhou Wan
On the calculation of equilibrium thermodynamic properties from molecular dynamics
published pages: 30236-30240, ISSN: 1463-9076, DOI: 10.1039/c6cp02349e
Physical Chemistry Chemical Physics 18/44 2019-05-20
2017 Maxwell Xu Cai (蔡栩), M. B. N. Kouwenhoven, Simon F. Portegies Zwart, Rainer Spurzem
Stability of multiplanetary systems in star clusters
published pages: 4337-4353, ISSN: 0035-8711, DOI: 10.1093/mnras/stx1464
Monthly Notices of the Royal Astronomical Society 470/4 2019-05-20
2018 Simon Portegies Zwart, Santiago Torres, Inti Pelupessy, Jeroen Bédorf, Maxwell X Cai
The origin of interstellar asteroidal objects like 1I/2017 U1 ‘Oumuamua
published pages: L17-L22, ISSN: 1745-3933, DOI: 10.1093/mnrasl/sly088
Monthly Notices of the Royal Astronomical Society: Letters 479/1 2019-05-20
2018 Bastien Chopard, Jean-Luc Falcone, Pierre Kunzli, Lourens Veen, Alfons Hoekstra
Multiscale modeling: recent progress and open questions
published pages: 57-68, ISSN: 2520-8160, DOI: 10.1007/s41939-017-0006-4
Multiscale and Multidisciplinary Modeling, Experiments and Design 1/1 2019-05-20
2018 O. O. Luk, O. Hoenen, O. Perks, K. Brabazon, T. Piontek, P. Kopta, B. Bosak, A. Bottino, B. D. Scott, D. P. Coster
Application of the Extreme Scaling Computing Pattern on Multiscale Fusion Plasma Modelling
published pages: , ISSN: , DOI: 10.1098/rsta.2018.0152
2019-05-20
2018 Sauro Succi, Peter V. Coveney
Big Data: the End of the Scientific Method?
published pages: , ISSN: , DOI: 10.1098/rsta.2018.0145
Phil Trans R Soc (Series A) 2019-05-20
2016 Silvia Toonen, Adrian Hamers, Simon Portegies Zwart
The evolution of hierarchical triple star-systems
published pages: , ISSN: 2197-7909, DOI: 10.1186/s40668-016-0019-0
Computational Astrophysics and Cosmology 3/1 2019-05-20
2018 S. Portegies Zwart and S. McMillan
Astrophysical Recipes: the Art of AMUSE
published pages: , ISSN: , DOI:
AAS IOP Astronomy 2019-05-20
2018 O. Luk, O. Hoenen, A. Bottino, B. Scott, D. Coster
ComPat Framework for Multiscale Simulations Applied to Fusion Plasmas
published pages: , ISSN: , DOI:
Computer Physics Communications 2019-05-20
2018 Anna Nikishova, Lourens Veen, Pavel Zun, Alfons G. Hoekstra
Uncertainty Quantification of a Multiscale Model for In-Stent Restenosis
published pages: , ISSN: 1869-408X, DOI: 10.1007/s13239-018-00372-4
Cardiovascular Engineering and Technology 2019-05-20
2018 A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwar, P. V. Coveney
Multiscale Computing for Science and Engineering in the Era of Exascale Performance
published pages: , ISSN: , DOI: 10.1098/rsta.2018.0144
2019-05-20
2019 S. Alowayyed, T. Piontek, J.L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P.V. Coveney, A.G. Hoekstra
Patterns for High Performance Multiscale Computing
published pages: 335-346, ISSN: 0167-739X, DOI: 10.1016/j.future.2018.08.045
Future Generation Computer Systems 91 2019-05-20
2018 S. Alowayyed, V. Azizi, G. Zavodszky and A. G. Hoekstra
Load Balancing Massively Parallel Cell-based Blood Flow Simulations
published pages: , ISSN: , DOI:
Computer Physics Communications 2019-05-20
2015 S. J. Zasada and P. V. Coveney
A Distributed Multi-agent Market Place for HPC Compute Cycle Resource Trading”
published pages: , ISSN: , DOI:
CoRR 2019-05-20
2017 Maxwell Xu Cai, Simon Portegies Zwart, Arjen van Elteren
The signatures of the parental cluster on field planetary systems
published pages: 5114-5121, ISSN: 0035-8711, DOI: 10.1093/mnras/stx3064
Monthly Notices of the Royal Astronomical Society 474/4 2019-05-20
2017 R. Charlotte Eccleston, Shunzhou Wan, Neil Dalchau, Peter V. Coveney
The Role of Multiscale Protein Dynamics in Antigen Presentation and T Lymphocyte Recognition
published pages: , ISSN: 1664-3224, DOI: 10.3389/fimmu.2017.00797
Frontiers in Immunology 8 2019-05-20
2018 S. Alowayyed, G. Závodszky, V. Azizi, A.G. Hoekstra
Load balancing of parallel cell-based blood flow simulations
published pages: 1-7, ISSN: 1877-7503, DOI: 10.1016/j.jocs.2017.11.008
Journal of Computational Science 24 2019-05-20
2018 M S Fujii, J Bédorf, J Baba, S Portegies Zwart
The dynamics of stellar discs in live dark-matter haloes
published pages: 1451-1471, ISSN: 0035-8711, DOI: 10.1093/mnras/sty711
Monthly Notices of the Royal Astronomical Society 477/2 2019-05-20
2017 Penny Xuran Qian, Maxwell Xu Cai, Simon Portegies Zwart, Ming Zhu
SiMon: Simulation Monitor for Computational Astrophysics
published pages: 94503, ISSN: 0004-6280, DOI: 10.1088/1538-3873/aa7c49
Publications of the Astronomical Society of the Pacific 129/979 2019-05-20
2017 Pavel S. Zun, Tatiana Anikina, Andrew Svitenkov, Alfons G. Hoekstra
A Comparison of Fully-Coupled 3D In-Stent Restenosis Simulations to In-vivo Data
published pages: , ISSN: 1664-042X, DOI: 10.3389/fphys.2017.00284
Frontiers in Physiology 8 2019-05-20
2017 Inti Pelupessy, Ben van Werkhoven, Arjen van Elteren, Jan Viebahn, Adam Candy, Simon Portegies Zwart, Henk Dijkstra
The Oceanographic Multipurpose Software Environment (OMUSE v1.0)
published pages: 3167-3187, ISSN: 1991-9603, DOI: 10.5194/gmd-10-3167-2017
Geoscientific Model Development 10/8 2019-05-20
2018 Simon F. Portegies Zwart, Tjarda C.N. Boekholt
Numerical verification of the microscopic time reversibility of Newton’s equations of motion: Fighting exponential divergence
published pages: 160-166, ISSN: 1007-5704, DOI: 10.1016/j.cnsns.2018.02.002
Communications in Nonlinear Science and Numerical Simulation 61 2019-05-20
2017 Gábor Závodszky, Britt van Rooij, Victor Azizi, Alfons Hoekstra
Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
published pages: 563, ISSN: 1664-042X, DOI: 10.3389/fphys.2017.00563
Frontiers in Physiology 8 2019-05-20
2017 Saad Alowayyed, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Multiscale computing in the exascale era
published pages: 15-25, ISSN: 1877-7503, DOI: 10.1016/j.jocs.2017.07.004
Journal of Computational Science 22 2019-05-20
2018 Adrian S Hamers, Maxwell X Cai, Javier Roa, Nathan Leigh
Stability of exomoons around the Kepler transiting circumbinary planets
published pages: 3800-3811, ISSN: 0035-8711, DOI: 10.1093/mnras/sty2117
Monthly Notices of the Royal Astronomical Society 480/3 2019-05-20
2018 James L. Suter, Peter V. Coveney
Chemically Specific Multiscale Modeling of the Shear-Induced Exfoliation of Clay–Polymer Nanocomposites
published pages: 6439-6445, ISSN: 2470-1343, DOI: 10.1021/acsomega.8b00542
ACS Omega 3/6 2019-05-20
2018 Robert C. Sinclair, James L. Suter, Peter V. Coveney
Graphene-Graphene Interactions: Friction, Superlubricity, and Exfoliation
published pages: 1705791, ISSN: 0935-9648, DOI: 10.1002/adma.201705791
Advanced Materials 30/13 2019-05-20
2018 Dakka, Jumana; Farkas-Pall, Kristof; Turilli, Matteo; Wright, David W; Coveney, Peter V; Jha, Shantenu
Concurrent and Adaptive Extreme Scale Binding Free Energy Calculations
published pages: , ISSN: , DOI:
arXiv 1 2019-05-20
2018 Derek Groen, Robin A. Richardson, Rachel Coy, Ulf D. Schiller, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney
Validation of Patient-Specific Cerebral Blood Flow Simulation Using Transcranial Doppler Measurements
published pages: , ISSN: 1664-042X, DOI: 10.3389/fphys.2018.00721
Frontiers in Physiology 9 2019-05-20
2018 Dakka, Jumana; Turilli, Matteo; Wright, David W; Zasada, Stefan J; Balasubramanian, Vivek; Wan, Shunzhou; Coveney, Peter V; Jha, Shantenu
High-throughput Binding Affinity Calculations at Extreme Scales
published pages: , ISSN: , DOI:
BioMed Central 1 2019-05-20
2018 Agastya P. Bhati, Shunzhou Wan, Yuan Hu, Brad Sherborne, Peter V. Coveney
Uncertainty Quantification in Alchemical Free Energy Methods
published pages: 2867-2880, ISSN: 1549-9618, DOI: 10.1021/acs.jctc.7b01143
Journal of Chemical Theory and Computation 14/6 2019-05-20
2018 Miguel O. Bernabeu, Martin L. Jones, Rupert W. Nash, Anna Pezzarossa, Peter V. Coveney, Holger Gerhardt, Claudio A. Franco
PolNet: A Tool to Quantify Network-Level Cell Polarity and Blood Flow in Vascular Remodeling
published pages: 2052-2058, ISSN: 0006-3495, DOI: 10.1016/j.bpj.2018.03.032
Biophysical Journal 114/9 2019-05-20

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