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EuBI PPII

Euro-BioImaging Preparatory Phase II - Project

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EC-Contrib. €

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Partnership

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Project "EuBI PPII" data sheet

The following table provides information about the project.

Coordinator
EUROPEAN MOLECULAR BIOLOGY LABORATORY 

Organization address
address: Meyerhofstrasse 1
city: HEIDELBERG
postcode: 69117
website: http://www.embl.de

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Germany [DE]
 Project website http://www.eurobioimaging.eu
 Total cost 1˙497˙910 €
 EC max contribution 1˙497˙910 € (100%)
 Programme 1. H2020-EU.1.4.1.1. (Developing new world-class research infrastructures)
 Code Call H2020-INFRADEV-1-2015-2
 Funding Scheme CSA
 Starting year 2016
 Duration (year-month-day) from 2016-01-01   to  2018-12-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    EUROPEAN MOLECULAR BIOLOGY LABORATORY DE (HEIDELBERG) coordinator 753˙500.00
2    ABO AKADEMI FI (ABO) participant 183˙950.00
3    CONSIGLIO NAZIONALE DELLE RICERCHE IT (ROMA) participant 169˙150.00
4    UNIVERSITY OF DUNDEE UK (DUNDEE) participant 162˙147.00
5    CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS FR (PARIS) participant 105˙547.00
6    FUNDACIO CENTRE DE REGULACIO GENOMICA ES (BARCELONA) participant 39˙000.00
7    FUNDACION PARA EL FOMENTO DE LA INVESTIGACION SANITARIA Y BIOMEDICA DE LA COMUNITAT VALENCIANA ES (VALENCIA) participant 28˙313.00
8    MEDZINARODNE LASEROVE CENTRUM SK (BRATISLAVA) participant 19˙832.00
9    UNIVERSIDADE DE COIMBRA PT (COIMBRA) participant 15˙302.00
10    USTAV MOLEKULARNI GENETIKY AKADEMIE VED CESKE REPUBLIKY VEREJNA VYZKUMNA INSTITUCE CZ (PRAHA 4) participant 10˙666.00
11    INSTITUTO DE BIOLOGIA MOLECULAR E CELULAR-IBMC PT (PORTO) participant 4˙500.00
12    INSTITUTO DE SALUD CARLOS III ES (MADRID) participant 1˙500.00
13    INSTYTUT BIOLOGII DOSWIADCZALNEJ IM. M. NENCKIEGO POLSKIEJ AKADEMII NAUK PL (WARSZAWA) participant 1˙500.00
14    ROUMEN TSANEV INSTITUTE OF MOLECULAR BIOLOGY BULGARIAN ACADEMY OF SCIENCES BG (SOFIA) participant 1˙500.00
15    WEIZMANN INSTITUTE OF SCIENCE IL (REHOVOT) participant 1˙500.00
16    BIOTECHNOLOGY AND BIOLOGICAL SCIENCES RESEARCH COUNCIL UK (SWINDON) participant 0.00
17    ERASMUS UNIVERSITAIR MEDISCH CENTRUM ROTTERDAM NL (ROTTERDAM) participant 0.00
18    Masarykova univerzita CZ (BRNO STRED) participant 0.00
19    UNITED KINGDOM RESEARCH AND INNOVATION UK (SWINDON) participant 0.00
20    UNIVERSITE DE MONS BE (MONS) participant 0.00
21    UNIVERSITEIT VAN AMSTERDAM NL (AMSTERDAM) participant 0.00
22    UNIVERSITETET I OSLO NO (OSLO) participant 0.00

Map

 Project objective

Euro-BioImaging (EuBI) is the pan-European research infrastructure project for imaging technologies in biological and medical sciences and has been on the ESFRI Roadmap since 2008. In close match with the scope and objectives of the INFRADEV2 call, Preparatory Phase II (PPII) funding will enable EuBI: • to finalize the submission and approval procedure of its ERIC statutes with the EC and bring them to signature by the EuBI Member States and EMBL to launch the EuBI-ERIC; • obtain commitments for the sustainable funding for the EuBI-ERIC by its Member States; • implement the operational EuBI Hub and recruit its staff to provide user access and services; • define and sign the service level agreements between EuBI-ERIC and the 1st generation of EuBI Nodes; • establish a procedure to increase EuBI-ERIC membership, so that new countries can continuously join the EuBI-ERIC with clear national benefits and contributions. From Dec 2010 until May 2014, EuBI successfully completed its EU FP7-funded Preparatory Phase I, which addressed key technical and strategic questions and provided a blueprint for infrastructure implementation. 14 European countries (BE, BG, CZ, FI, FR, IL, IT, NO, PL, PT, SK, ES, NL, UK), and the PPI coordinator EMBL have signed the EuBI Memorandum of Understanding to jointly undertake the remaining steps required to draft and submit the EuBI ERIC application to the EC. The MoU signatories constitute the EuBI Interim Board (IB), which now governs the Interim Phase. To maintain the successful momentum of Member State engagement, the EuBI PPII project consortium comprises and is fully supported by all IB Members. We have jointly defined clear and measurable objectives that will bring EuBI to full maturity in order to start operation and provide its services to European researchers immediately upon launch of the EuBI-ERIC. The award of PPII funding would leapfrog the start of EuBI-ERIC user access and service provision by at least 1,5 year’s time or more.

 Deliverables

List of deliverables.
Report on Nodes funding scheme for user access Documents, reports 2019-09-10 11:33:32
Recruitment policy and procedure for the senior management staff for EuBI ERIC Documents, reports 2019-09-10 11:33:32
Detailed description of the EuBI ERIC executive management (description of all positions, reporting lines, responsibilities and operational procedures in the EuBI ERIC) Documents, reports 2019-09-10 11:33:32
Procedure for identification and evaluation of new Nodes Documents, reports 2019-09-10 11:33:32
Testing of the basic framework of EuBI online user access portal, with the most central links and functions included, and improvements and corrections implemented based on the testing Documents, reports 2019-09-10 11:33:32
Report on the current status of negotiation and conclusion of service level agreements with the individual EuBI Nodes Documents, reports 2019-09-10 11:33:32
Publication of the comprehensive communication strategy for Euro-BioImaging operation Documents, reports 2019-09-10 11:33:32
Comprehensive testing of the functionality of the user access portal, with connections to nodes and related online tools implemented. Final improvements of the portal and correction measures with several iterations done Documents, reports 2019-09-10 11:33:32
Web-based UI for IRP, implemented in software and available for use. Websites, patent fillings, videos etc. 2019-09-10 11:33:32
Report on the implementation of an e-forum and online platform for initial and vocational training and exchange activities on the EuBI web-access portal Documents, reports 2019-09-10 11:33:32
Web access portal running with all features, including links to the EuBI nodes\' online resources Websites, patent fillings, videos etc. 2019-09-10 11:33:32
Draft rules of procedure for the EuBI govenance and advisory bodies Documents, reports 2019-09-10 11:33:32
Develop internal policies for EuBI governance and advisory bodies Documents, reports 2019-09-10 11:33:32
Design of UX and UI for IDR, presented to all participants for feedback as mock-ups Websites, patent fillings, videos etc. 2019-09-10 11:33:32
Design of UX and UI for IRP, presented to all participants for feedback as mock-ups. Websites, patent fillings, videos etc. 2019-09-10 11:33:32
Report on successful integration of all EuBI ERIC Hub services (integration and access via web-access portal to all services including image data and training activities) Documents, reports 2019-09-10 11:33:32
First list and description of identified sites for EuBI user training Documents, reports 2019-09-10 11:33:32
Report on the portfolio of identified CFS training courses in lifelong vocational training Documents, reports 2019-09-10 11:33:32
Report on the successful launch meetings of the EuBI Board and Scientific Advisory Board at the EuBI ERIC Documents, reports 2019-09-10 11:33:32
Web-based UI for IDR, implemented in software and available for use in the released IDR Websites, patent fillings, videos etc. 2019-09-10 11:33:32
Report on the EuBI Preparatory Phase II external communication and outreach activities Documents, reports 2019-09-10 11:33:32
Report on potentially interesting new imaging technologies for which user need should be demonstrated Documents, reports 2019-09-10 11:33:32
Taggathon-Meeting, to update the catalogue of image processing and analysis tools, including their utility and interoperability and image data repositories, including the imaging domains they cover and their current and planned scale and capabilities. Documents, reports 2019-09-10 11:33:31
Report presenting the first comprehensive catalogue of current and future image data repositories Documents, reports 2019-09-10 11:33:31
List of the nominated and ratified 1st generation of EuBI Nodes (including detailed information on each Node) Documents, reports 2019-09-10 11:33:31
Procedure for the identification of new technologies in the fields of biological and medical imaging Documents, reports 2019-09-10 11:33:32
Organization of a meeting of CFS from EuBI Nodes candidates Documents, reports 2019-09-10 11:33:31
Overall design and technical solutions and practices for the various tasks of the EuBI online user access portal Documents, reports 2019-09-10 11:33:31
Procedure for the identification of outdated technologies for de-commissioning from the technology portfolio Documents, reports 2019-09-10 11:33:32
Quality Assurance and Risk Management Plan established Documents, reports 2019-09-10 11:33:32
Hub operational costs/budget Documents, reports 2019-09-10 11:33:31
Technical framework set up of EuBI online user access portal with the most central functions Documents, reports 2019-09-10 11:33:31
Report on Nodes operational costs/budget Documents, reports 2019-09-10 11:33:31
Report describing the utility and required updates of existing ontologies for the annotation of experimental manipulations (e.g., EFO) and cell morphologies and phenotypes (e.g., CMPO) Documents, reports 2019-09-10 11:33:31
Report on the set-up of coordination tools for user and CFS access to training activities, including procedures for user application, course evaluation, training sites certification. Documents, reports 2019-09-10 11:33:31
Report on the involvement options of members Documents, reports 2019-09-10 11:33:32
Publication of project website Websites, patent fillings, videos etc. 2019-09-10 11:33:31
Procedure for enhanced process interoperability for the existing and future technology portfolio Documents, reports 2019-09-10 11:33:32
Report on establishment and first conference call of executive Project Management Documents, reports 2019-09-10 11:33:31
Template for service level agreements for the collaboration between the EuBI Hub and EuBI Nodes Documents, reports 2019-09-10 11:33:32
Submission of ERIC application to the EC including EuBI ERIC statutes and all other required documents Documents, reports 2019-09-10 11:33:32
Completion of the EuBI ERIC statutes and general Rules of Procedure by approval of IB Documents, reports 2019-09-10 11:33:32
Hub financial contribution scheme Documents, reports 2019-09-10 11:33:31
Report on the procedure for determination of topics and frequency of CFS training on emerging technologies. Documents, reports 2019-09-10 11:33:32
Procedure for implementation of training of facility staff on identified new emerging imaging technologies Documents, reports 2019-09-10 11:33:32

Take a look to the deliverables list in detail:  detailed list of EuBI PPII deliverables.

 Publications

year authors and title journal last update
List of publications.
2017 Eleanor Williams, Josh Moore, Simon W Li, Gabriella Rustici, Aleksandra Tarkowska, Anatole Chessel, Simone Leo, Bálint Antal, Richard K Ferguson, Ugis Sarkans, Alvis Brazma, Rafael E Carazo Salas, Jason R Swedlow
Image Data Resource: a bioimage data integration and publication platform
published pages: 775-781, ISSN: 1548-7091, DOI: 10.1038/nmeth.4326
Nature Methods 14/8 2019-09-10

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