Opendata, web and dolomites

VIDOCK SIGNED

2D Conformal mapping of protein surfaces: applications to VIsualization and DOCKing software

Total Cost €

0

EC-Contrib. €

0

Partnership

0

Views

0

Project "VIDOCK" data sheet

The following table provides information about the project.

Coordinator
CONSERVATOIRE NATIONAL DES ARTS ET METIERS 

Organization address
address: RUE SAINT MARTIN 292
city: PARIS CEDEX 03
postcode: 75141
website: http://www.ict-phydyas.org/

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country France [FR]
 Project website http://vidock.eu
 Total cost 1˙498˙791 €
 EC max contribution 1˙498˙791 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2014-STG
 Funding Scheme ERC-STG
 Starting year 2015
 Duration (year-month-day) from 2015-07-01   to  2021-06-30

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    CONSERVATOIRE NATIONAL DES ARTS ET METIERS FR (PARIS CEDEX 03) coordinator 1˙498˙791.00

Map

 Project objective

The goals of structural biology include developing a comprehensive understanding of the molecular shapes and forms embraced by biological macromolecules and extending this knowledge to understand how different molecular architectures are used to perform the chemical reactions that are central to life. Since the first resolution of protein structures by X-ray crystallography and NMR, structural biology seeks to provide this picture of biological phenomena at the molecular and atomic level by analyzing 3D structures. In the present proposal, we propose to change this paradigm by changing the mode of representation of protein surfaces to 2D maps. That will open new avenues for 1. the development of innovative high-throughput computation of protein interactions and relationships and 2. the emergence of new forms of visualization and analysis of protein structures and properties. We will apply this powerful tool of conformal mapping to structural biology by representing protein surfaces that are complex 3D surfaces in 2D conformal maps that we will call positive conformal maps. We will extend this representation by also generating the 2D conformal maps of the negatives of the 3D surface of the proteins. These positive and negative 2D conformal maps of the surface of proteins will constitute a new representation of the protein surfaces that will be the basis for innovative high-throughput and/or interactive simulation methods, visualization methods and more generally that will give an other insight on the structure of proteins. The major impact of this proposal lies in the fact that it will at last open the gates of the long awaited proteome docking. Using a simplified representation of protein surfaces will allow to perform faster complete cross docking calculations and create a new classification of the protein structures based on their surficial similarity.

 Publications

year authors and title journal last update
List of publications.
2019 Langenfeld, Florent; Axenopoulos, Apostolos; Benhabiles, Halim; Daras, Petros; Giachetti, Andrea; Han, Xusi; Hammoudi, Karim; Kihara, Daisuke; Lai, Tuan; Liu, Haiguang; Melkemi, Mahmoud; Mylonas, Stelios; Terashi, Genki; Wang, Yufan; Windal, Feryal; Montes, Matthieu
Protein Shape Retrieval Contest
published pages: , ISSN: , DOI: 10.2312/3dor.20191058
1 2020-02-06
2018 Bouchara, Tifanie,; Raigneau, Valère; Montes, Matthieu
Sonification Immersive de la Surface de ProtéinesProt´Protéines
published pages: , ISSN: , DOI:
30eme conférence francophone sur l\'interaction homme-machine 1 2020-02-06
2019 Montes Matthieu
Mapping the Future Of Drug Design
published pages: , ISSN: , DOI:
2020-02-06
2018 Langenfeld, Florent; Axenopoulos, Apostolos; Chatzitofis, Anargyros; Craciun, Daniela; Daras, Petros; Du, Bowen; Giachetti, Andrea; Lai, Yu-kun; Li, Haisheng; Li, Yingbin; Masoumi, Majid; Peng, Yuxu; Rosin, Paul; Sirugue, Jeremy; Sun, Li; Thermos, Spyridon; Toews, Matthew; Wei, Yang; Wu, Yujuan; Zhai, Yujia; Zhao, Tianyu; Zheng, Yanping; Montes, Matthieu
SHREC 2018 – Protein Shape Retrieval
published pages: , ISSN: 1997-0463, DOI: 10.2312/3dor.20181053
Eurographics Workshop on 3D Object Retrieval (2018) 53-61 1 2019-07-24
2017 Song, Na; Craciun, Daniela; Christoffer, Charles; Han, Xusi; Kihara, Daisuke; Levieux, Guillaume; Montes, Matthieu; Qin, Hong; Sahu, Pranjal; Terashi, Genki; Liu, Haiguang
SHREC\'17 Track: Protein Shape Retrieval
published pages: , ISSN: , DOI: 10.2312/3dor.20171055
1 2019-07-24
2017 Craciun, Daniela; Levieux, Guillaume; Montes, Matthieu
Shape Similarity System driven by Digital Elevation Models for Non-rigid Shape Retrieval
published pages: , ISSN: , DOI: 10.2312/3dor.20171051
1 2019-07-24

Are you the coordinator (or a participant) of this project? Plaese send me more information about the "VIDOCK" project.

For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.

Send me an  email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.

Thanks. And then put a link of this page into your project's website.

The information about "VIDOCK" are provided by the European Opendata Portal: CORDIS opendata.

More projects from the same programme (H2020-EU.1.1.)

PROGRESS (2019)

The Enemy of the Good: Towards a Theory of Moral Progress

Read More  

HOLI (2019)

Deep Learning for Holistic Inference

Read More  

SuperH (2019)

Discovery and Characterization of Hydrogen-Based High-Temperature Superconductors

Read More